Hyphomicrobium denitrificans ATCC 51888: Hden_2897
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Entry
Hden_2897 CDS
T01265
Name
(GenBank) diguanylate cyclase/phosphodiesterase with PAS/PAC and periplasmic/7TM domain sensor(s)
Organism
hdn
Hyphomicrobium denitrificans ATCC 51888
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_3
7TMR-DISM_7TM
PAS
PAS_4
7TMR-DISMED2
PAS_9
PdeA_PAS
Motif
Other DBs
NCBI-ProteinID:
ADJ24693
UniProt:
D8JUR3
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Position
complement(2986818..2990540)
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AA seq
1240 aa
AA seq
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MRKGGRGNENSGLSRLAVLAVAILWMLGLAGHAAALTPIPIQDDQDRVEITNLGEAYEGR
GDSLQVETSAGQDGVSGRMTVRASVPGTSPNWMVFALTNKTDKSLERLLAADRYSIVGSG
TVWPDLDARRIESVTPSVGFVPERIKSDKADVFRITLEPGQTITYVAELAGEHFSRLYLW
KPIDYEIKSRDRQLFNGAMLGLTGLLAIFLTAIFAANHKLIFPAAALVSWTVLSYLCVDF
GFFHKLFNLRPEDNAVYRAAGEAAMASSFVIFLSTFLRLGLWHGMVRMMIGVWMVAQLTL
IAVAVIDPRLAATFARLSFLMIGGVGGLFTLFLAFKGQDRALSLVPTWLLLLVWIFATGM
TLSGRMSGDVVVSSLIAGLVLVVILMGFTVTQYAFRSSDAAYAGAPTELQGRSLALAASG
STVWEWNIRRDEIKVSPEVEIALSLMPGELSTKVEDFLRHVHPTDKERFRVMMMSAQERS
GVRIRTDFRLRHSDNSWRWFELEAASVPNSDGRTLRCVGLLRDVSDMKRAHERLLHDAVN
CSLTGLPNRELFLDRLKGVVSRAKTDGGVRPAVIFIDLDKFKSINSSFGLVRGDSLLLTV
ARRLQRHLGPHDTVARVGGDQFAMLFVGEREARNLPALAERVRRSLRAPIPLANQEVILT
GSIGVAAWDENQSADGDLLKDAELAMYRAKRAGADRIEVFDASMRRDRDSNIGAELAKAI
EKGQLKVVYQPIVYLPTKELAGFEAFARWEHPKLGLVNPASVIDEANEPDAMVKVSAYLL
LRAAKDASRWLAELPRPERPLFVTVNISSPHIFKPESIQEIRHILGRNIVPPGTLRLEIA
ENLMMGNPEQAIEVLKVLRGSGAELSLDEFGTGYSSLAYLNRFPFDTIKVCRGLVRGSGT
ANGAAIMRSMVALAHELSKTVVAEGVERADEATFLRSIGCEYAQGYHFGEPIPERAVAQL
LKMVRRSERKMQPRGFFRPKFKNAAKKVVAQAARPAAAIAKSVANGEAKTTTAPPQGAAK
AAALPAGSVVRHRHKPDPKAVANGASPNPVANAGAPGTPGMPSKKPADALRVAVAASGPA
LPPAAAPSLPPELLQTMERRSVPPQNPRAPANGHAAPGAPPFRPAAEPAPAAPPRQAILA
PLSEALARAAASDPTTGRPAPQRPPANGMPPASPGEPQPRRAEAPLPPPPPVNVTPSQPD
FSTLPPSIAASLARLAGNAPASGEPENGAPRTEQKIASKG
NT seq
3723 nt
NT seq
+upstream
nt +downstream
nt
atgcgcaaggggggacgggggaacgaaaattcgggattgtcacggctcgcggtgctggcc
gtcgcaattctttggatgctcggcctcgccgggcacgccgccgctctgactccgatcccg
attcaagacgatcaagaccgggttgaaatcaccaatctcggcgaagcctacgaagggcgc
ggcgatagcctgcaagtcgaaacctcggctgggcaggatggcgtgtcgggccgcatgacg
gttcgcgcctcggtgccgggcaccagccccaactggatggtgttcgcgctcaccaacaag
accgacaagtcactcgaacgcctgctcgcagccgaccgctattccatcgtcggatcggga
acggtctggcccgatctcgacgcccggcgcatcgaaagcgtcacgccgtctgtcggcttc
gtgccagagcgcatcaagagcgacaaggcggacgtgttccgcatcacgctcgagcccggc
cagacgatcacctacgttgccgagcttgcgggcgagcacttctcgcggctctatctttgg
aagccgatcgactacgaaatcaaaagccgcgaccgtcagctcttcaacggcgccatgctc
ggcctgaccggcctgctcgcgatcttcctgaccgcgattttcgcggcaaatcacaagctg
atcttccccgcagctgccctcgtctcctggacggtgctgagctacctgtgcgtcgacttc
ggtttcttccacaagctgttcaacctgcggcccgaggacaacgccgtctatcgcgccgcc
ggcgaagccgcgatggcgtcgagcttcgtaatcttcctgtcgacgttcctgcgcctcgga
ctctggcacggaatggtgcgcatgatgatcggcgtgtggatggtggcgcagctgacgctc
atcgccgtcgccgttatcgatccgcgcttggccgcaaccttcgcgcgcctgtcgttcctg
atgatcggcggcgtcggcggattgttcacgctcttcttggcgttcaaaggccaggaccgc
gcactatcgctggtaccgacatggcttctgcttcttgtctggatcttcgcgaccggaatg
acgctcagcggacgcatgtcgggcgacgtcgtcgtctcgagcctgatcgcgggcctcgtg
ctggtcgtgatcctgatgggcttcaccgtcacgcagtacgccttccggtcctccgatgcg
gcctacgcaggcgcgccgaccgaacttcagggccgctctctcgcgctggccgcgtccggc
tcgacggtctgggaatggaatatccgccgcgatgagatcaaggtcagccccgaagtcgaa
atcgcgctgtcgctgatgcccggcgaactctcgaccaaggtcgaggattttctgcgccac
gtccacccgaccgacaaagagcgcttccgcgtcatgatgatgtcggcgcaggaacgctca
ggcgtccgcatcagaaccgacttccgcctccgtcattccgacaacagctggcgctggttt
gaacttgaggccgcgagcgtcccgaattccgacggacgcacgcttcgctgtgtcggcctg
ctgcgcgacgtgtccgacatgaagcgcgcccacgagcggctgctccacgacgcggtcaat
tgcagcctgaccggccttcccaatcgcgaactgtttctcgatcgcctgaagggtgtcgtc
agccgcgcaaagaccgatggcggcgttcgcccggccgtgatcttcatcgacctcgacaag
ttcaagagcatcaattcttcgttcggtctcgtgcgcggcgacagcttgcttctgaccgtc
gcgcgccgcctgcagcgccacctcggaccgcacgacaccgtcgcgcgcgtcggcggcgat
cagttcgcgatgctgttcgtcggcgaacgggaagcgcgtaatcttcccgcgcttgcggaa
cgcgtccgccgctcgctgcgcgcgccgatcccgctcgccaatcaggaagtcatcctcacg
ggctccatcggcgtcgccgcatgggacgaaaatcaatctgccgatggcgatctgctgaag
gatgccgagcttgcgatgtatcgcgccaagcgcgccggcgccgatcgcatcgaagtcttc
gacgcctccatgcgccgcgaccgcgactcgaacatcggcgccgaactcgccaaggcaatc
gagaagggtcagctgaaggtcgtctatcagccgattgtttacctgccgacgaaagagctt
gcgggcttcgaagctttcgcgcgctgggagcatccgaaactcggcctcgtcaatccggcg
tcggtcatcgacgaggccaacgagccggacgcgatggtcaaggtcagcgcctacctgctg
ctgcgagccgcgaaagacgcctcgcgctggttggccgaactgccgcgtcctgaacggccg
ttgttcgtcaccgtcaacatttctagcccgcacatcttcaagccggaatcgatccaggag
atccgccacatcctcggccgcaacatcgtcccgccggggacgttgcgtctggagatcgcc
gaaaatctcatgatgggcaatccggagcaggccatcgaagtgctgaaggtgcttcgcggc
tcaggcgcggaactctcgttggatgaattcggcaccggctattcatcgctcgcctatttg
aaccgcttcccgttcgacacgatcaaggtctgtcgcggattggtgcgcggcagtggcacc
gcgaacggcgccgcgatcatgcgatcgatggtggcgctggcgcacgagctttcgaaaacc
gtcgtcgccgaaggcgtcgaacgtgcggacgaagcgacgttcctgcgctcgatcggttgc
gaatacgcgcaggggtatcacttcggcgaacccattccggagcgcgcagtcgcgcagctc
ttgaagatggtgcgccgctccgaacgcaagatgcagccgcgcggcttcttccgcccgaaa
ttcaagaacgcggcgaaaaaggtcgtcgcacaagcggcgcgaccggcggctgcgattgcg
aaatccgtcgccaacggcgaggcgaagacgaccaccgcgccgcctcagggtgcggccaag
gctgcggcgcttccggcaggatcggttgtgcgtcaccggcacaaacccgaccccaaggcc
gtggcgaacggcgcaagtccgaaccccgtcgcaaacgccggcgcacccggcacgccgggc
atgccgtcgaagaaaccggccgatgcgctccgtgtggcagttgccgcttccgggccggca
ttgccgccagccgcagcgccctcgttgccgccggaactcctgcaaaccatggaacgcaga
tcggtgccgccgcaaaacccgcgcgccccggcaaacgggcacgccgcgcccggcgctccg
ccgttccgtccggccgccgaaccggctccggcggcaccaccacgacaggcgatcctggcg
ccgttgtcggaagcattggcgcgcgcagcggcgtctgatccgacgactggacgaccagcg
ccgcaacgtccacccgcgaacgggatgccacccgcgagcccgggtgagccgcagcctcgg
cgcgctgaagcgccgttgccacctccacctccagtcaacgtaacgccgtcgcagccggac
ttctcgacgctgccgccgtcgatcgcggcaagtctcgcgcggctcgcaggcaatgcgccg
gcctcaggcgaaccggagaacggcgcgccgagaaccgaacagaagatcgcgtcgaaggga
tag
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