KEGG   Hyphomicrobium denitrificans ATCC 51888: Hden_3277
Entry
Hden_3277         CDS       T01265                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
hdn  Hyphomicrobium denitrificans ATCC 51888
Pathway
hdn03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:hdn00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Hden_3277
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hdn03021]
    Hden_3277
   03019 Messenger RNA biogenesis [BR:hdn03019]
    Hden_3277
Transcription machinery [BR:hdn03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Hden_3277
Messenger RNA biogenesis [BR:hdn03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Hden_3277
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 NACHT AAA_25 S1CSD-TOTE-2 AAA UCP018868 Fungal_virus_P2_C Spore_III_AA
Other DBs
NCBI-ProteinID: ADJ25070
UniProt: D8JWW2
LinkDB
Position
3349368..3350633
AA seq 421 aa
MKQMKLEDLKRKSPAELVTFAEETGVENASTLRKQELMFATLKQLATQETEITATGVVEV
LQDGFGFLRSPEANYLPGPDDIYVSPSQIRRFALRTGDTVEGQIRSPKDGERYFALLKVS
NINFEDPEKAKHKSHFDNLTPLYPTKWLKLEIEDPTIKDFSSRVIDIVSPLGKGQRALIV
APPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRNVKGEVISSTFDEPPS
RHVQVSEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDSNALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRKVSDKRVFPA
IDVARSGTRKEDLLVPRDQLKKVYVLRRILNPMGTMDAIEFLIDKLRSTKTNGEFFQSMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgaaacaaatgaagctcgaggacctgaagcggaaatctcccgccgagcttgtcacgttt
gccgaagaaaccggggtcgagaacgcttcgaccctgcggaagcaggaactgatgttcgcg
acgctgaagcagctcgcgacgcaggaaaccgaaatcacggcgactggagtcgtcgaggtt
ctgcaggacggtttcggctttttgagatcgccggaagcgaactatcttcccggtcccgac
gatatttatgtgtcgccgtcgcagatccggcgatttgcgcttcggaccggtgatacggtc
gaaggccagatccggtcgccgaaggatggcgagcgctatttcgcgctgctcaaagtctcg
aacatcaacttcgaagaccccgagaaggccaaacataagagccatttcgacaacctaacg
ccgctctatccgacgaagtggctgaagctcgagatcgaagatccgacgatcaaggatttc
tcttcgcgcgtcatcgatatcgtgtcgccgctcggcaaaggccagcgcgccctgatcgtc
gcgccgccgcgcaccggtaagaccgtgctgttgcagaacatcgcgcactcgatcacggcc
aatcatcccgagtgctatctgatcgtgctgctgatcgacgagcggccggaagaagtcacc
gacatgcagcgcaacgtcaaaggcgaggtgatttcctcgaccttcgacgaaccgccgtca
cgtcacgtccaagtctcggagatggtcatcgagaaggctaagcgtctcgttgagcataag
agggacgtcgtcattctgctcgactcgatcacgcgtctcggtcgtgcctacaacactgtt
gttccgtcatccggcaaggttttgactggcggcgtcgactcgaatgcgttgcagcggccg
aagcggttcttcggtgcggcccgcaatatcgaggaaggcggttcgctgaccatcatcgcg
acagcgctgatcgacaccggatcgcgcatggacgaagtgatcttcgaagaattcaagggt
acaggcaactcggaaatcatcctggaccgcaaggtctcggacaagcgcgtgttcccggcg
atcgacgtggcgcgctccggcacgcgcaaagaggatttgctggtgccgcgcgatcagctc
aagaaggtctacgtcctgcgccgcatcctcaatccgatgggcacgatggacgcgatcgag
ttcctgatcgacaagctgcgctcgacgaagaccaatggcgagttcttccagtcgatgaat
acgtga

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