Hyphomicrobium denitrificans ATCC 51888: Hden_3377
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Entry
Hden_3377 CDS
T01265
Name
(GenBank) ErfK/YbiS/YcfS/YnhG family protein
KO
K21470
L,D-transpeptidase YcbB
Organism
hdn
Hyphomicrobium denitrificans ATCC 51888
Brite
KEGG Orthology (KO) [BR:
hdn00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
hdn01002
]
Hden_3377
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
hdn01011
]
Hden_3377
Peptidases and inhibitors [BR:
hdn01002
]
Cysteine peptidases
Family C82
Hden_3377
Peptidoglycan biosynthesis and degradation proteins [BR:
hdn01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
Hden_3377
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Scaffold
YkuD
Motif
Other DBs
NCBI-ProteinID:
ADJ25170
UniProt:
D8JXI9
LinkDB
All DBs
Position
complement(3444034..3445707)
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AA seq
557 aa
AA seq
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MGNFKSILFGAVAALAMIQPAFADPTPSETSAQAAPAPAQPEATPETQATPEATSTPDAV
APAAAADDPVLGVARSKLAAAKASDDEREKMDQTALTEFYAARHGDGLWVTASGVKPETK
ALITEIENANAYGLDASAFKLPMLENGALTATDTDTLADAEIQYSTAALQYARFARGGRI
PDPAEMLTTEFDRRPQWIDPATVIKALADSHEPDAYLRSLHPQQPQFEKLRQLYVTMLPA
NGNLAKLSPAAKRLRANMEMWRWMWPDMGDFYVLNNIPEFMQYVYKDGEIIRSAKIVAGE
VDKKSTIFSRPLKYVVLRPAWRVPESIMVNELWPSLIRGGGLMRQYGLQLQTKDGRRVDW
RQYDWSSTDIRNFIVLQPPGPKSVLGRVKFSFPSQHTIFMHDTPDKWMFRPAQRTLSHGC
LRVQNPMQLAEMVLKEDKGWDAAKIAELDRSGPLNNEVPISKEIPIHLVYFTAWVTDDGK
LKTFNDVYGHEKRVTLALDGQWSKIKKGRNHLAPVEPSFNPAAVASKSRGRDTATATRRS
AQTNATLGDIIGSAFGL
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atggggaacttcaagagcattctgttcggcgcggttgcggctttggcaatgatccagcca
gctttcgcggacccaacgccgagcgaaacttcggcacaggcagcgcctgcgcccgcacag
cccgaagcaacgcccgaaacgcaagcaacccccgaagccacttcaacgcccgacgccgtc
gcgccggcggcagccgccgacgatccggtcctcggcgtcgcgcgctcgaagctcgccgct
gcgaaggcatccgacgacgagcgcgagaaaatggatcagacggcgctcaccgaattttac
gcggcgcgccacggcgacggactttgggtgaccgcgtccggcgtgaaacccgaaaccaaa
gccctcatcaccgaaatcgaaaacgccaacgcctacggtctcgacgccagcgccttcaaa
cttccgatgctcgaaaacggcgcgctgaccgcgaccgacaccgacacgctggccgatgcg
gaaatccagtactcgacagcagccctgcaatacgcgcgcttcgcgcgtggcggacgcatt
cccgaccccgccgaaatgctgacgaccgaattcgaccgccgtccgcagtggatcgacccc
gcaaccgtgatcaaggctctggcggactcgcacgaacccgacgcttacctacgcagcctg
catccgcaacagccgcagttcgaaaagctgcgccagctctacgtgacgatgctgcccgcc
aacgggaacctcgcgaagctcagccccgccgccaagcgtcttcgcgccaacatggagatg
tggcgctggatgtggcccgacatgggcgacttctacgtgctgaacaacatccccgagttc
atgcagtacgtttacaaggacggcgaaatcattcgctccgccaagatcgttgcaggcgaa
gtcgataagaaatcgacgattttctcgcggcctttaaaatacgtcgtgcttcgcccggca
tggcgcgtgccggaaagcatcatggtcaacgagctgtggccgagcctcattcgcggcggc
gggctcatgcgccagtatggccttcagctccagaccaaggacggacgccgcgtcgactgg
cgccaatatgattggtcgtcgaccgacattcgcaacttcatcgtgctccagccgcccggt
ccgaagagcgtcctcggccgcgtgaagttttcgttcccgagccagcacacgatcttcatg
cacgacacgcccgacaaatggatgttccgtcccgcccagcgcacgctgagccacggctgc
ctgcgcgtgcaaaatccgatgcagctcgccgaaatggtcttgaaggaagacaagggctgg
gatgccgccaagatcgccgagctcgatcgctcgggtcccctcaacaacgaggttccgatc
tcgaaggaaatcccgatccacctcgtctatttcaccgcctgggtcacggacgacggcaaa
ctgaaaaccttcaacgacgtctacggccacgaaaagcgcgtgacgctggcgctcgacggg
caatggtcgaaaatcaagaagggccgcaatcacctcgcgccggtcgagccgagcttcaat
ccggccgcggtcgcttccaagtctcgcggccgcgacactgccaccgccacccggcgctcc
gcgcaaacgaacgcgacgctcggggacatcatcggcagcgccttcgggctctga
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