Hyphomicrobium denitrificans ATCC 51888: Hden_3485
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Entry
Hden_3485 CDS
T01265
Name
(GenBank) RNA modification enzyme, MiaB family
KO
K06168
tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:
2.8.4.3
]
Organism
hdn
Hyphomicrobium denitrificans ATCC 51888
Brite
KEGG Orthology (KO) [BR:
hdn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hdn03016
]
Hden_3485
Enzymes [BR:
hdn01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.4 Transferring alkylthio groups
2.8.4.3 tRNA-2-methylthio-N6-dimethylallyladenosine synthase
Hden_3485
Transfer RNA biogenesis [BR:
hdn03016
]
Prokaryotic type
tRNA modification factors
Methylthiotransferases
Hden_3485
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF0004
Radical_SAM
TRAM
Motif
Other DBs
NCBI-ProteinID:
ADJ25276
UniProt:
D8JY72
LinkDB
All DBs
Position
3560986..3562335
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AA seq
449 aa
AA seq
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MNRPERKTYFLKTFGCQMNVYDSERMAETLARDGYSETSDVDGADLVILNTCHIREKAAE
KVYSELGRIRDVKNERAKDGKNTVIAVAGCVAQAEGPEITARQPAVDLVIGPQSYHRLPE
LITRTTVDRKHIVETEFPGDEKFARMKAPRRISSPSAFLTIQEGCDKFCTFCVVPYTRGS
EYSRSVAKIEAEAHELARAGAKELVLLGQNVNAYHGEGADGRTASLADLIRTLAAIEGVE
RIRYMTSHPRDMSDDLIAAHADVPQLMPFLHLPVQSGSDRILAKMNRKHTAAEYVDLIAR
IRKARPDIALSSDFIVGFPGETEQDAEDTIALIEAVGFAQAFSFKYSARPGTPAAGHGDQ
LDEAVKSERLLRLQAVLDAQQVSFNAQSLGGVVPVLFERKGREAGEFVGRTPYLQLVHAA
GEGDLIGKTANVAVNETRRSSLSGVISAA
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
gtgaaccgtcccgaacgcaaaacctattttctgaagacctttggctgtcagatgaatgtc
tatgacagcgagcgcatggcggaaacgctggcgcgcgacgggtatagcgaaacgtccgac
gtcgatggcgccgatctcgtcatcctcaatacctgccatatccgcgagaaggcggcggag
aaggtctattcggaactcggccgcatccgcgacgtgaaaaacgagcgcgccaaggatggc
aagaatacggtgatcgcggttgctggttgtgttgcgcaagccgaagggccggagatcacg
gcgcggcagccggccgtcgatctggtgattgggccgcagagctatcatcggttgccggaa
ctcatcacgcgcacgacggtcgatcgcaagcacatcgtcgagacggaatttccgggagac
gagaagttcgcgcgcatgaaggcgccgcgccgcatctcgtcgccgtcggcgtttctgacg
atccaggaaggctgcgataagttctgcacgttctgcgtcgtgccgtacacgcgcggttcg
gaatattcgcgatcggttgcgaaaatcgaagcggaagcgcacgagcttgcccgcgcaggc
gcgaaagagctcgttctcctcggccaaaacgtcaacgcttatcatggcgaaggcgcggat
ggacgaacggcgagcctcgccgatctgatccggacgctcgctgccatcgaaggcgtcgaa
cgcatccgctacatgaccagccatccgcgcgacatgagcgatgatctgatcgccgcgcac
gcggacgtgccgcagctgatgccgttcttgcatctgccggtgcaatcggggtccgatcgc
atactcgcgaaaatgaaccgcaagcacacggcggcggagtacgtcgatcttatcgcgcgc
atccgcaaggcgcgccccgacatcgcgctgtcgagcgatttcatcgtcggctttcccggc
gagacggagcaggatgccgaggacacgatcgcgttgatcgaggcggtgggcttcgcgcag
gcgttctcgttcaaatacagcgcgcggccgggaacgcccgccgctggacatggcgaccag
ctcgacgaggcggtgaagtctgagcggctgctgcggctgcaggctgttctcgatgcgcag
caggtttcgttcaacgcccagagcctcggcggggtcgttccggtcctgttcgagcgcaag
gggcgcgaggccggggaatttgtcggccggacgccctatctccagctcgttcatgccgct
ggggagggcgatctgatcggaaaaacagccaatgtcgccgtcaacgaaacccgccggtcg
agcctttcgggtgtcatttcggcggcataa
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