Hyphomicrobium denitrificans ATCC 51888: Hden_3502
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Entry
Hden_3502 CDS
T01265
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hdn
Hyphomicrobium denitrificans ATCC 51888
Pathway
hdn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hdn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Hden_3502
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hdn03019
]
Hden_3502
03016 Transfer RNA biogenesis [BR:
hdn03016
]
Hden_3502
Enzymes [BR:
hdn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
Hden_3502
Messenger RNA biogenesis [BR:
hdn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
Hden_3502
Transfer RNA biogenesis [BR:
hdn03016
]
Prokaryotic type
tRNA degradation factors
Hden_3502
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
S1_RRP5
Motif
Other DBs
NCBI-ProteinID:
ADJ25293
UniProt:
D8JY89
LinkDB
All DBs
Position
3578919..3581120
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AA seq
733 aa
AA seq
DB search
MFDIHRVEIDWGGRKLKLETGHYARQADAAVMAQYGDTTVLATVVGARSVKPGIDFFPLT
VNYQERTYAAGKIPGGYFKREGRPSEKETLTSRLIDRPIRPLFVEGFKNETQVVVTVLSH
DLENDPDILGMVAASAALTLSGLPFLGPIGGARVGLVNGELVLNPMIDEMKDSALDLVVA
GTADAVMMVESEAKELPEAQMLEAVVFGHKHMQPVIQAIITLAEKAAKEPWDIKIPDKAK
YAGEVKKLAEKTLKQAFSTKEKGKRQDLVAEAKKAISEGISIPADDPNEKVLLSDAFKAL
EMDIMRGDVLKTKMRIDGRDLKTVRPILSEVHVLPRTHGSALFTRGETQALVVATLGTGE
DEQFIDSLEGTKKERFLLHYNFPPYSVGEVGRMGSPGRREIGHGKLAWRAIHPMLPSQED
FPYTLRVVSEITESNGSSSMATVCGSSLALMDAGVPLKSPVAGIAMGLIKEGDEFVVLSD
ILGDEDHLGDMDFKVAGTANGVTSLQMDIKITGITEEIMRIALDQAHDGRIHILGEMAKS
LTGAREELGEFAPRIETIKIPVDKIREVIGSGGSVIREIVAESGAKIDIEDDGTVKIASA
NRESIEKALARIRGITSEPEVGQIYKGKVVKVMEFGAFVNFFGAKDGLVHISQLAPGRPE
SVGAVVKEGQEVYVKLLGFDDRGKTRLSMKIVDQATGQEIPRAEGEPEEVFESRPPRREG
GRGGPRGPRRDRN
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgtttgatatccatcgagtcgaaatcgattggggtggccgcaagctgaagctcgaaacc
ggccactatgcacgccaggccgacgcggccgtgatggcgcaatacggcgacacgacggtt
ctggcgaccgtcgtcggcgcacgctccgtgaagcccggcatcgacttcttcccgctcacc
gtgaactatcaggagcgcacgtacgcggcgggcaagatccccggcggctatttcaagcgc
gaaggccgtccgagtgaaaaagaaacgctgacgtcgcggctcatcgatcgtccgatccgc
ccgctgttcgtcgaaggcttcaagaacgaaacacaggtcgtcgtgacggtgctgtcgcac
gatctcgaaaacgatcccgacattctcggcatggtggctgcatccgcggcgctgacgctt
tcgggcctgccgttcctcggaccgatcggcggcgcccgcgtcggcctcgtcaacggtgag
ctggtgctcaatccgatgatcgacgagatgaaggacagcgcgctcgatctcgtcgtcgcc
ggcactgccgacgcggtgatgatggttgaatcggaagccaaggagcttcccgaggcgcag
atgctcgaagccgtcgtgttcggccacaagcatatgcagcccgtgatccaggcgatcatc
acgctcgccgaaaaagccgcgaaagagccgtgggacatcaagatccccgacaaggcgaag
tatgcgggcgaggtgaagaagctcgccgagaagacgctgaagcaggcgttctcgacgaag
gaaaagggcaagcgccaggacctcgtcgcggaagccaagaaggcgatttcggaaggcatt
tcgattcctgccgacgatccgaacgagaaggtcctgctctcggatgccttcaaggcgctt
gaaatggacatcatgcgcggcgacgttctgaagacgaagatgcgcatcgacggccgcgac
ctgaagacggtgcgtccgatcctgtcggaagttcacgttctgccgcgtacgcacggctcg
gcgctgttcacgcgcggtgagacgcaggcgctggtcgtcgcgacgctcggcacgggcgag
gacgaacagttcatcgacagcctcgaaggcacgaagaaagagcgcttcctgctgcattac
aacttcccgccctactcggtcggcgaagttggacgcatgggttcgccgggccgccgcgaa
atcggccacggcaagctcgcgtggcgcgccattcatccgatgctgccgtcgcaggaagac
ttcccctacacgctgcgcgtcgtctcagagatcaccgagtccaacggctcgtcgtcgatg
gcgacggtctgcggttcgtcgctggctctgatggatgcgggcgtgccgctgaagtcgccg
gtcgcgggcatcgcgatgggtctgatcaaggaaggcgacgaattcgtcgttctctccgac
attctcggcgatgaagatcatctcggcgatatggacttcaaggtggcgggcacggccaat
ggcgtgacgtcgctgcagatggacatcaagatcaccggcatcaccgaagagatcatgcgc
atcgcgctcgatcaggcgcatgatggccgcatccacatcctcggcgaaatggcgaagtcg
ttgacgggcgcgcgcgaggaactcggcgagttcgcgccgcgtatcgagacgatcaagatc
ccggtcgacaagatccgcgaagtcatcggttcgggcggttcggtcatccgcgagatcgtc
gcggagtcgggcgccaagatcgacatcgaggacgacggcacggtgaagatcgcgtcggcc
aatcgcgagtcgatcgagaaggcgctggcgcgcattcgcggcatcacgtcggagcccgag
gtcggacagatctacaagggcaaggtcgtgaaggtgatggagttcggcgcgttcgtgaac
ttcttcggcgcgaaggacggactggttcacatttcgcagcttgctccggggcgtccggag
tcggtcggcgcggtcgtcaaggaaggccaggaagtttacgtgaagcttctgggcttcgat
gatcgcggcaagacacgtctgtcgatgaagatcgtcgatcaggcgacgggccaggaaatt
ccgcgtgcggaaggcgagccggaagaagtcttcgagagccgtccgccgcgtcgtgaaggt
ggccgtggcggtcctcgcggtccgcgtcgcgatcgcaactga
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