Halococcus dombrowskii: MUK72_13215
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Entry
MUK72_13215 CDS
T08074
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hdo
Halococcus dombrowskii
Brite
KEGG Orthology (KO) [BR:
hdo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hdo03016
]
MUK72_13215
Enzymes [BR:
hdo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MUK72_13215
Transfer RNA biogenesis [BR:
hdo03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MUK72_13215
Prokaryotic type
tRNA splicing ligases
MUK72_13215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
UOO94918
UniProt:
A0AAV3SH35
LinkDB
All DBs
Position
2535152..2536609
Genome browser
AA seq
485 aa
AA seq
DB search
MDTYDADGVTLERVEEYVWEIPQEGEMNAPARVLASEELLDQIADDKTLQQLKNSTQLPG
VQKYAICMPDGHQGYGFPVGGVAGIDAEDGCISPGAVGFDINCGVRMMTTNLTYEDVQGH
EEELVESLFANIPSGLGGGGVVESGVETVEEILDRGVEWALDEGYAVEDDLAHCEDEGRR
PDADPDAVSQKSKDRGKNQIGSLGSGNHFLEVQRVTDVFREGVADSYGLSEDQIVVLIHC
GSRGLGHQVCTEYTREVEQAHPELLEQLPDKELAAAPAGSQLAEEYYGAMCAAINYAWVN
RQLIMHRTRKVFERVFDRSWEEMEMDLLYDVAHNIAKKEAHEVDGEERELYVHRKGATRA
FPAGREEVPSAYRDVGQPVIIPGSMGAGSYVLRGGESSMETTFGSTAHGAGRTMSRTQAK
DEFWGEDIQDDLREQKVYVKAQSGATVAEEAPGVYKDVDEVVRVSDELGIGDTVARTFPV
CNIKG
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atggacacgtacgacgccgacggggtcacgctcgaacgagtcgaggagtacgtttgggag
atcccacaggagggggagatgaacgcgccggcgcgggtgctcgccagcgaggaactgctc
gatcagatcgccgacgacaagacgctccagcagctgaagaactcgacacagctcccgggc
gtacagaagtacgcgatctgcatgcccgacggtcatcaggggtatggcttcccggtgggt
ggcgtcgccggcatcgacgccgaggacggctgcatctcgcccggagccgtgggcttcgac
atcaactgcggcgtgcgaatgatgacgacgaacctcacctacgaggacgttcagggccac
gaggaggagctggtcgagtcgctctttgcgaacatcccttcgggactcggcggcggtggc
gtcgtcgagtcgggcgtcgaaacggtcgaggagatcctcgatcggggcgtcgagtgggcg
ctcgacgagggctacgccgtcgaggacgatctcgcccactgtgaggacgagggtcgccgt
ccggacgccgaccccgacgccgtctcgcagaagtcaaaggacaggggcaaaaaccagatc
ggcagcctggggtcgggcaaccacttcctcgaagtccagcgcgtgaccgacgtgttccgc
gagggcgtggccgattcctacgggctctctgaggatcagatcgtcgtcctcatccactgt
ggctcgcgcgggctcggccaccaggtctgtaccgagtacacccgcgaggtcgagcaggcc
catccggagcttctggagcagctgccggacaaggagctcgcggccgcgcccgccgggagt
cagctcgccgaggagtactacggcgcgatgtgtgcggcgatcaactacgcgtgggtcaac
cgccagctcatcatgcatcgcacgcgaaaggtgttcgagcgggtgttcgaccgctcgtgg
gaggagatggagatggacctgctctacgacgtggcccacaacatcgcgaagaaggaggcc
cacgaggtcgacggcgaggagcgcgaactctacgtccaccgcaagggcgcgacgcgggcg
tttccggccgggcgcgaggaagtgccgagcgcctatcgcgacgtcggccagccggtcatc
atcccggggagcatgggcgctggctcgtacgtcctgcgcggtggcgagagttcgatggaa
accaccttcggctcgacggcccacggtgccggccggacgatgagtcgcacgcaggccaaa
gacgagttctggggcgaggacatccaggacgacctccgtgagcagaaagtgtacgtgaag
gcccagagcggcgcgacggtcgccgaggaggcccccggggtctacaaggacgtcgacgag
gtcgtgcgcgtctccgacgagctgggcatcggcgataccgtggcccggaccttcccggtc
tgcaacatcaagggctag
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