Halapricum desulfuricans: HSR122_0571
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Entry
HSR122_0571 CDS
T07709
Symbol
tfa1
Name
(GenBank) Transcription initiation factor IIE, alpha subunit
KO
K03136
transcription initiation factor TFIIE subunit alpha
Organism
hds
Halapricum desulfuricans
Pathway
hds03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
hds00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
HSR122_0571 (tfa1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hds03021
]
HSR122_0571 (tfa1)
Transcription machinery [BR:
hds03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIE
HSR122_0571 (tfa1)
Prokaryotic type
Archaeal type
TFE
HSR122_0571 (tfa1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIE_alpha
Sigma70_r3
zf-HYPF
Zn_Ribbon_TF
DUF7129
Zn_ribbon_8
RUBY_RBDX
Zn_ribbon_LysW
HypA
DUF7575
NRDD
Zn_ribbon_6
Cas12f1-like_TNB
Zn_ribbon_TiaS
DUF7560
Motif
Other DBs
NCBI-ProteinID:
QSG07978
UniProt:
A0A897N6T2
LinkDB
All DBs
Position
complement(535439..535972)
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AA seq
177 aa
AA seq
DB search
MAFEDLLEDPVIQKYLHELVGPKGMPVAAAPPDGEVTDEELAEELGLELNDVRRALFILY
ENDLASYRRLRDEDSGWLTYLWTFHYENIPEQLEAEMHRLLDGLEERREYEFEHEFYLCE
NCGIRFEFGEAMDFGFECPDCGSQLDAMENTMLLEAMEERIEQLRDELNVEPDTERV
NT seq
534 nt
NT seq
+upstream
nt +downstream
nt
atggcttttgaggatctcctggaggacccggtcatacagaagtacctccacgaactcgtc
ggaccgaaggggatgcccgtcgccgccgcgccgccggacggcgaagtgacggacgaggaa
ctggcggaggagttgggactcgaactcaacgacgtccgccgggcgctgttcatcctctac
gagaacgacctggcgagctaccgccgactgcgcgacgaggactcggggtggctgacctac
ctctggacgttccactacgagaacatccccgagcaactcgaagcggagatgcaccggttg
ctggatggactcgaggaacgccgagagtacgagttcgaacacgagttttacctctgtgag
aactgcgggatccgcttcgagttcggcgaggcgatggacttcggcttcgaatgtcccgac
tgtggctcccagctggatgcgatggagaacacgatgttgctcgaggcgatggaggaacgg
atcgaacagttgcgcgacgaactcaacgtcgaacccgacacggaacgagtctga
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