Halapricum desulfuricans: HSR122_2330
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Entry
HSR122_2330 CDS
T07709
Symbol
rtcB2
Name
(GenBank) RNA 3'-P ligase, RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hds
Halapricum desulfuricans
Brite
KEGG Orthology (KO) [BR:
hds00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hds03016
]
HSR122_2330 (rtcB2)
Enzymes [BR:
hds01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HSR122_2330 (rtcB2)
Transfer RNA biogenesis [BR:
hds03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HSR122_2330 (rtcB2)
Prokaryotic type
tRNA splicing ligases
HSR122_2330 (rtcB2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QSG09708
UniProt:
A0A897NBA8
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All DBs
Position
2187465..2188913
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AA seq
482 aa
AA seq
DB search
MPIDLDGAHTTATVMVDDESLLEASAREQIQTLIDHEAFTEPVVIMPDTHWGAGAPVGFT
MPLPDRIVPNVVGVDVGCGMAATNLGDTLPLSDPERERRVRETVPMGRDVHAYDDAPHLV
EQFPFERANEVFRRFEETYRERFGRPIDPVSFDFSGYDEQYFTDLCDRVLSRKPQGIGHV
IKSAGTLGGGNHFVEFARARESGEHWLVIHSGSRYLGLAVAEYWQERATDLRNADAIRAA
IPETDYRYLEFDPETVSDADLYAWVTGGKGQSHIDREAVLGDKDGEAIERTFDRLNDVEP
EPQARNTDLDYLDGREAHGYYVDMLFAQQYARWNRELMSDAICEALGVDPVDRFQSIHNY
VDFRDLTIRKGATPAREGQRLVVPFNMADGSILARGKGNETWNRTAPHGAGRTMSRREAS
ERASVEDLRERMDGVYSESLVDSVLDEAPIAYKDAERIAATIEPTAEIVDWLDPVHNIKA
LE
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgccaatcgatctcgacggtgcacacacgactgcgacggtgatggtcgacgacgaatcg
ctgctcgaggcgtccgcacgcgagcagatccagacgctgatcgatcacgaggcgttcacc
gaaccggtcgtgatcatgccggacacccactggggggccggcgcgcccgtcggtttcacg
atgccgttgcccgatcggatcgtcccgaacgtcgtcggcgtcgacgtcggctgcgggatg
gccgcgacgaacctgggcgacacgctgccgctctcggacccggagcgcgaacgacgagtc
cgcgagaccgtgccgatggggcgggatgtccacgcgtacgacgacgccccgcacctcgtc
gaacagttccccttcgagcgcgccaacgaggtattccgacggttcgaggaaacctatcgc
gagcggttcggccggccgatcgatcccgtctcgttcgacttctcgggatacgacgaacag
tacttcacggacctgtgtgatcgcgtcctctcgcgcaagccccagggaatcggccacgtc
atcaaaagcgccgggacgctcggcggcggcaaccacttcgtcgagttcgcccgcgcccgc
gagtccggcgagcactggctggtgatccacagcggttcgcgctatctggggcttgccgtc
gccgaatactggcaggagcgcgcgaccgacctccgcaacgccgacgcgatccgcgcggcg
atccccgagactgactatcggtatctcgaattcgatccggagacagtcagcgacgccgac
ctgtacgcctgggtgaccggcgggaagggtcagtctcacatcgaccgcgaggccgtcctc
ggggacaaggacggcgaggccatcgagcggacgttcgaccggctgaacgacgtcgaaccg
gaaccgcaagcccgcaacacggacctggattatctcgacggccgtgaggcgcacggctac
tacgtggacatgctgttcgcccagcagtacgcccgctggaaccgcgagctgatgagcgac
gctatctgtgaggcgctcggggtcgatcccgtcgaccggttccagtcgatccacaactac
gtggacttccgcgatctgacgatcaggaagggtgcgactccggcccgcgaagggcagcga
ctggtcgtcccgttcaacatggccgacgggtcgattctggctcgcggcaagggcaacgag
acctggaaccggacggcgccccacggcgcgggccggacgatgagtcgccgcgaggccagc
gaacgcgcctccgtcgaagacctccgcgagcgaatggacggcgtctactcggagtcgctc
gtcgactcggtgctggacgaagcgccgatcgcgtacaaggacgcggaacggatcgccgcg
acgatcgaaccgaccgccgaaatcgtcgactggctggacccggttcacaacatcaaggcc
ctcgaatag
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