Hyphomicrobium denitrificans 1NES1: HYPDE_23828
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Entry
HYPDE_23828 CDS
T02646
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hdt
Hyphomicrobium denitrificans 1NES1
Pathway
hdt03420
Nucleotide excision repair
hdt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hdt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HYPDE_23828
03430 Mismatch repair
HYPDE_23828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hdt03400
]
HYPDE_23828
Enzymes [BR:
hdt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HYPDE_23828
DNA repair and recombination proteins [BR:
hdt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HYPDE_23828
MMR (mismatch excision repair)
Other MMR factors
HYPDE_23828
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
AAA_30
UvrD_C_2
PcrA_UvrD_tudor
AAA_11
DHC_N1
Motif
Other DBs
NCBI-ProteinID:
AGK56451
UniProt:
N0B7E0
LinkDB
All DBs
Position
complement(255057..257513)
Genome browser
AA seq
818 aa
AA seq
DB search
MTSTRKPNAETGPELPADDDPPFDLPQAPGAASATARQDNNAEEIQSISARAIRAAHGAP
AYLDGLNPEQRKAVETTEGPLLVLAGAGTGKTRVLTTRIAHILATGKAYPSQILAVTFTN
KAAREMRDRIGGLIGGTLEGMSWLGTFHSIGVKILRRHAELVGLKSGFTILDDDDQVRLL
KQVIEAAGLDKDRWPARQLAGLIDSWKNRGLTPEKVPDGESFSFAAGKGAALYAAYQARL
KDLNACDFGDLLLECLRLFREHPDVLADYHRRFRYILVDEYQDTNVAQYLWLRLLAQGCP
NICCVGDDDQSIYGWRGAEVDNILRFEKDFPGAKVIRLERNYRSTANILAAASGLIAKNA
GRLGKTLFTDGSAGSKIAVANFWDDEAEARAIGEDIEQFQRAHEKLNDIAILVRASSQMR
AIEDRFITLGLPYRVIGGPRFYERQEIKDAIAYFDVVANPSNDLKFERIVNVPKRGLGDT
SIKRIHELARARGTSLYQAAREIIETDELSGKARKSLSDLMQAFERWRGNLDHMRHTDLA
ELVLDESGYTAMWQADKSPQAQSRLENLKELVRFMHDFETLQGFLEHVSLVMDADQSSDG
DRVSLMTLHAAKGLEFGIVFLPGWEEGLFPHQRSLDESGKAGLEEERRLAYVGLTRAKRR
AKISFAQNRRTHGLYQSALPSRFVDELPEATVDVIESEMPYGGRATYGYGNPFGPSRFDR
AGGSEPFGSNYKTPGWQRAQQSWNSGRDTKKRARTPITLEGELVAASTANAASFKNGTRI
RHEKFGDGTVTFVDGNKLTINFDDGTTKRVVSSFVDPI
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgacttcgactcgcaagccgaacgccgagacgggcccggagttgccggccgacgacgat
ccgccgttcgatctgccgcaagctcctggggccgcaagcgccaccgccagacaggacaat
aacgctgaggaaatccaatcgatctcggcgcgcgcaattcgggctgcgcacggcgccccg
gcgtatctggatggcctcaatcctgaacagcgcaaagctgtcgaaacgacagaaggtccc
ctcctcgttctagccggagcgggcaccggaaagacacgtgtactgacgacccgcatcgcc
catatcctggcgaccgggaaagcctatccgtcgcagattctggccgtcacgttcacgaac
aaggcggcgcgcgagatgcgcgaccggatcggcggactgatcggcggcacgctggagggc
atgtcgtggctcggaacgttccattcgatcggcgtcaagattctgcgccgtcacgccgaa
ctggtcggcctgaagtcgggcttcacgattctcgacgacgacgatcaggtccggctcctg
aaacaggtcatcgaggcggcgggcctcgataaggatcgctggcccgcccgccaactcgcc
ggtctcatcgacagctggaagaaccgcggcctgacgccggagaaagtgccggatggcgaa
tccttctctttcgccgctggcaagggcgccgccctttacgccgcctaccaagcccgcctc
aaggacctcaacgcctgcgacttcggcgatctgctgctcgaatgcctgcggctgttccgt
gagcatcccgatgtcctcgccgattatcatcgccggttccgctacatcctcgtcgacgaa
tatcaggatacaaacgtcgcgcagtacctgtggctgcgcctcttggcgcaaggttgccca
aacatctgctgcgtcggcgacgacgaccagtcgatttatggctggcgcggcgccgaagtc
gacaacatcctgcgctttgaaaaggacttccccggcgcgaaagttattcggcttgaacgc
aattatcgctccaccgcaaacatcctcgccgccgcctcggggctgatcgccaagaacgcc
ggccgcctcggcaagactctgtttaccgatggctccgccggttccaagattgcggtcgcg
aacttttgggacgatgaagccgaggcgcgcgccattggcgaagacatcgagcaattccag
cgcgcccacgaaaaactgaacgatatcgccattctcgtgcgcgcatcgtcccagatgcgc
gccatcgaggaccggttcattacgctcggcctgccgtatcgcgtcattggcggcccgcgt
ttttatgaacgtcaggaaatcaaggatgccatcgcctatttcgacgtcgtcgccaatcct
tccaacgacctgaagttcgagcgcatcgtcaacgtaccgaaacgcggccttggcgatacg
agcatcaagcgcatccatgagcttgcgcgtgcccgcgggacctcgctctatcaggcggcg
cgcgagattatcgagacggacgaactctcgggcaaggcgcgcaaatcgctctccgacttg
atgcaggcattcgagcgttggcgcggcaatctcgatcacatgcgccacactgatcttgcg
gaactcgtgctggacgagtcgggctacaccgcgatgtggcaggccgacaaaagtccgcaa
gcccagtcgcgcttggaaaacttgaaggaactcgtgcgattcatgcacgacttcgaaacg
ctgcaagggttccttgagcacgtctcgctggtcatggatgccgatcagagcagcgacggc
gaccgcgtctcgctgatgacgctgcacgccgccaagggacttgaattcggcatcgtcttc
ctgccgggctgggaggaaggattgtttccgcatcagcgctcgctcgatgaaagcggcaag
gcgggcctcgaagaagagcgccgcctcgcctacgtcgggctgacgcgcgccaaacgccgc
gcgaagatttcgttcgcgcagaaccggcgcacgcacggcctctaccaatcggcgctgccg
tcgcgatttgtcgacgagctgcccgaggcgacggtcgacgtgatcgaaagcgagatgccc
tacggtggccgcgcgacctatggctatggcaacccgttcgggccaagccgtttcgaccgc
gccggtggttccgaaccattcggctcaaattacaagacgcccggctggcaacgcgcccag
caatcctggaacagcggccgcgatacgaaaaagcgagcccgaacgccgatcacactcgaa
ggcgaattggttgcggcatcaacagccaacgctgcgtccttcaaaaacggcacgcgcatc
cggcacgaaaagttcggcgatggaacggtgacgtttgtcgacggcaacaagctgacaatc
aattttgatgacggcacgacgaaacgggtcgtgtcgagcttcgtcgaccctatatga
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