Hyphomicrobium denitrificans 1NES1: HYPDE_27693
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Entry
HYPDE_27693 CDS
T02646
Name
(GenBank) ribonuclease, Rne/Rng family protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hdt
Hyphomicrobium denitrificans 1NES1
Pathway
hdt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hdt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYPDE_27693
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hdt03019
]
HYPDE_27693
03009 Ribosome biogenesis [BR:
hdt03009
]
HYPDE_27693
Enzymes [BR:
hdt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HYPDE_27693
Messenger RNA biogenesis [BR:
hdt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HYPDE_27693
Ribosome biogenesis [BR:
hdt03009
]
Prokaryotic type
rRNA processing factors
HYPDE_27693
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AGK57218
UniProt:
N0B2L6
LinkDB
All DBs
Position
complement(1014046..1017057)
Genome browser
AA seq
1003 aa
AA seq
DB search
MSNTKMLIDATHPEETRVVVQRNGRVEEFDFESAARKLLRGNIYLAKVTRVEPSLQAAFV
DYGGNRHGFLAFNEVHPDYYQIPVADRQALLDEEAAAEAELEAAADRRAEALARRNVRSH
ADAETGPDSPGDDFGDLSPADTSLEASHIVDVEEDEHIEEIGGEEDGEQTVKVVASAVRR
SIDEVRTELPPDDTAETSAKEKSASDASDESPIVVGDDSTESEAAPSNVEGDEEQPEQPS
DERPASDDEFAHQDALNDNGSAEPHDEGSHPEFREGPRSRQRRRPRSYKIQEVIKRRQII
LVQVVKEERGNKGAALTTYLSLAGRYTVLMPNTARGGGISRKITNPQDRRRLKAIAQELE
VPEGMGLIIRTAGATRTKQEIKRDFEYLLRLWESVRDLTLQSTAPSLVYEEGDLIKRSIR
DLYNKDVEEIVVAGEAGHQEAADFMKMLMPSHTKNVVAYREPTPLFTRYGVERQLNAMFQ
PQVTLRSGGYIVINQTEALVAIDVNSGKSTREFSIEETALATNLEAADEIARQLKLRDLA
GLIVIDFIDMEEKRNNRAVERRLKDALRFDRARIQLGRISHFGLMEMSRQRLRTGVLEGS
TSQCPHCQGTGIIRSTESIALAVLRGIEDVITAGANGPLIATTTPAVALYILNSKRAYIA
DMEVRHGYSVTVLGSDRVQGANFTVERSTTSALPVRRAERAAVNMDWGFDAEGDAPSYAS
SDIDISSEAAEVEEETVDREQRNGGRDGDENDQRRGRRRRRRGRGGRDRGDDRSENYSFE
PRGEDSDRDQAATDETHHESGEPNFNIEGLGEQPSVDDGAQAYAGDGNGSDDKPNKRRRR
GRRGGRRGRERGRDSAQDSTATSETEHPDVDDEGSDEAVEAPDRSEPDEAGSNERTAPPP
QSRRPRRVWDVPSAANGADDIATETPSIAESSEPSPQPVATEASPEPAAAPSAPTRRRHE
IGSSEPRIERVVVGPGEQAGEAESATGSVPQRKGWWQRKFSGE
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaacacaaaaatgcttatcgatgccacgcatcccgaggagactcgggttgtggtt
caacgcaacggccgggtagaggagttcgatttcgaaagcgctgctcgcaagctattgcga
ggcaatatttatctcgcgaaagtaacgcgtgttgagccgtccttgcaggctgccttcgtg
gactacggcggcaatcgccacgggttcctcgcattcaacgaagtccatcccgattattac
cagatcccggtcgccgaccgtcaggccctccttgacgaggaagcagcggccgaagccgag
cttgaggccgctgccgaccgccgtgccgaagcgctggcgcgtcgcaatgtgcgcagccac
gccgatgcggaaacgggccccgattcccccggcgacgatttcggcgacctctcccctgcc
gacacctcgcttgaggcgtcccatatcgttgacgtcgaggaagacgagcacatcgaagag
atcggcggagaggaagacggcgagcagacggtcaaggtcgtcgcttcggcggttcgccgg
tccatcgatgaggtgcgcaccgagttgccgcccgacgacacggccgaaacgagcgcgaaa
gagaaatctgcctcggacgccagcgacgagagcccgatcgtcgtgggcgatgactcaacg
gaaagcgaagcggccccttcgaacgttgaaggcgacgaggaacaacccgaacaaccgtcc
gacgaacgtccggctagcgacgacgagttcgcccatcaggatgcactaaacgacaacggt
tcggccgagcctcatgacgaaggctcccatccggaatttcgcgaaggcccgcgctctcgt
cagcgccgccgcccgcgcagctacaagatccaggaagtcatcaagcggcgccagatcatt
ctggtgcaggttgtcaaagaggaacgcggcaacaaaggcgcggcgctcacgacgtatctg
tcgctcgccgggcgctacacggttctgatgccgaacaccgcacgcggcggcggcatttca
cgcaagatcaccaacccgcaagatcgccgtcgtctgaaggccatcgctcaggagctcgag
gttccggagggaatgggcctcattatccgtacagccggcgcaacgcggacgaagcaggag
atcaagcgcgacttcgaatatctgctgcgtctctgggaaagcgtccgcgacttgacgctt
cagtccacggcgccgagcctcgtctacgaggaaggcgatctgatcaagcgctcgatccgc
gatctatataacaaggacgtcgaggaaatcgtcgtcgcgggcgaagccgggcatcaggaa
gcagccgactttatgaagatgctgatgccgagccacacgaagaatgtcgtcgcttatcgc
gagccgacaccgctcttcacgcgctacggcgtcgaacgccagctcaatgcgatgttccag
ccgcaggtgacattgcgctcaggcggctacatcgtcatcaaccagacggaagcgctcgtc
gcaatcgacgtcaactcgggaaaatcgacgcgtgaattctcgatcgaggaaacggcgctc
gcgacgaacctcgaagccgccgatgaaatcgcccggcagctgaagcttcgcgatctcgcg
ggtctcatcgtcatcgatttcatcgacatggaggagaagcgcaacaaccgtgcggtcgaa
cgccgcctgaaggacgcgctgaggttcgatcgggcgcgcatccagcttggccgcatctcg
catttcggcttgatggaaatgtcgcgtcagcgtctcagaaccggtgtgctcgaaggttct
acgtcgcaatgcccgcattgtcagggcaccggcatcatacgctcaaccgagagcattgcg
ctcgcagtcttgcgcggcatcgaggacgtgattacggcaggcgccaacggtcccctgatc
gctacgacgacgcctgcagttgcgctttacatcttaaacagcaagcgcgcctacatcgcc
gacatggaagtgcggcacggctattcggtaacagtgcttggcagcgatcgcgtgcagggc
gcgaacttcaccgtcgagcgaagtaccacatcggcccttccggttcgccgcgcggagcgc
gcggcagtcaacatggactggggctttgacgccgaaggcgatgccccctcctacgcatcc
tccgacatcgatatatcgagcgaagccgcagaagtcgaagaggaaaccgtcgaccgcgaa
cagcgtaacggtggccgcgacggcgatgaaaacgatcagcgccgtggccgtcgtcgcaga
cgccgcggcagaggcggacgcgaccgcggcgacgatcgcagcgaaaactattctttcgag
ccgcgcggggaagactccgaccgcgatcaagccgcgactgacgagacacaccacgaatcc
ggcgagcctaacttcaatatcgaagggcttggcgaacagccatccgtcgatgacggcgcg
caagcctacgccggcgatggcaacggttctgacgacaaacccaacaaacgccgcagacgc
ggacgccgcggcggccgccgcgggcgcgaacgcggtcgcgattcagcgcaggattcgaca
gcgacttccgaaaccgaacatccggacgttgacgacgagggatcagacgaagctgtcgaa
gctcctgatcggagcgagcccgatgaagcgggctcgaatgagcgaacggcacctccgcct
cagagccggcgtccgcgtcgcgtttgggacgttccatcggcggccaacggagcggatgac
atcgcaacagagacgccgtcaatcgcggaatcgtcggagcccagcccgcaacctgtggcc
acggaagcgtctccggagccagcggcagcgccaagcgccccaacccggcggcgtcacgaa
atcggatcgagcgaaccgcgtatcgagcgcgtcgtggtcggccccggcgagcaagcaggc
gaggcggaatcagctacgggatccgtgcctcagcgcaaaggttggtggcagaggaaattc
agcggcgaataa
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