Hyphomicrobium denitrificans 1NES1: HYPDE_31018
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Entry
HYPDE_31018 CDS
T02646
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
hdt
Hyphomicrobium denitrificans 1NES1
Pathway
hdt00061
Fatty acid biosynthesis
hdt00071
Fatty acid degradation
hdt01100
Metabolic pathways
hdt01212
Fatty acid metabolism
hdt02024
Quorum sensing
hdt04146
Peroxisome
Module
hdt_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
hdt00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
HYPDE_31018
00071 Fatty acid degradation
HYPDE_31018
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
HYPDE_31018
09145 Cellular community - prokaryotes
02024 Quorum sensing
HYPDE_31018
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
hdt01004
]
HYPDE_31018
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hdt04147
]
HYPDE_31018
Enzymes [BR:
hdt01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
HYPDE_31018
Lipid biosynthesis proteins [BR:
hdt01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
HYPDE_31018
Exosome [BR:
hdt04147
]
Exosomal proteins
Exosomal proteins of breast milk
HYPDE_31018
Exosomal proteins of breast cancer cells
HYPDE_31018
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
AMP-binding_C_3
Motif
Other DBs
NCBI-ProteinID:
AGK57878
UniProt:
N0B4E1
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All DBs
Position
1677023..1678735
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AA seq
570 aa
AA seq
DB search
MTPEAAQPPASTSPSWIASYPPEIDWYMPIPTGPVPELLERAARRFPRNTAISFLGRATT
YADLAAEVDRVTAGLQQIGIGRGTKVGLFLPNTPTFIVYYYAILKAGGTVVNFNPLYTLE
ELTFQANDSETEVMVTHDLAALFPKLEELMVRGVVRRTIVVPFRSVLPPLKGLLFSIFKR
SEIADVAGSRAADKVVSGAELAATREAPVPVQINAADDVAVLQYTGGTTGTPKGAMLTHA
NLTANTAQITAWGVNLKSGEESVLGVLPLFHVFAMTVVMNMAIELAAKIILIPRFKLVDA
LKLIDREKPTVLPAVPTIFTAMLHYPKFRSYDVSSLRFCISGGAPLPLEIKLQFEAVSGS
KVVEGYGLSEASPVLTCNPIDKDPVPGSIGPPLPGTIISLRDIDDPTKEVPQGERGELCA
KGPQIMKGYWKKPAETEKQFVDGFLRTGDVAIMDQNGYFSIVDRIKDLIICSGYNVYPRR
IEEAIYEHPAVEEVTVIGVSDAYRGEAPKAFIKLKAGMTATASDILKHLEPKISKIEMPA
AIEFRDSLPKTMIGKLSKKELAAEERSKRG
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgacgcccgaagcagcccagccgcccgcgtccacttccccatcctggattgcctcatat
ccccccgagatcgactggtatatgccaatcccgaccgggccggtgccggagcttctggaa
cgggccgcgcgccgtttcccgcgtaatacggccatcagctttcttgggcgcgcaacaacc
tatgccgatctggccgctgaggtcgaccgggtaaccgcgggcctgcagcagataggaatc
ggccgcggcacgaaagtcggactatttcttcccaacaccccgacattcatcgtttattat
tacgcaatactcaaagccggcggcacggttgtcaatttcaacccgctatatactctcgaa
gagcttacttttcaggcaaacgatagcgaaaccgaggtgatggtcacgcatgacctagcc
gctctgttcccgaagctcgaagaactcatggtgcgtggcgtcgtccggcgcaccatcgtc
gtgccgttcagaagcgtcctgccgccgctcaagggcctgctgttttcgattttcaagcgt
agcgagatcgccgacgtcgccggttcacgggcggcggacaaagtcgtcagcggtgccgag
cttgccgccacgcgcgaagctcccgtccccgttcagatcaatgcggcggacgacgtcgcc
gtcctccaatatactggcggcacgaccggcacgccgaagggcgccatgctgacgcacgcc
aatctcacggcgaacaccgcgcagatcacggcctggggcgttaacctgaaatcgggtgaa
gaaagcgtcctcggagtgctgccgttgttccacgtcttcgcgatgacggtcgtgatgaac
atggccatcgagcttgccgcgaaaatcattctcatcccgcgcttcaagctcgtcgacgcc
ttgaagctcattgaccgggagaagccgacggtcttgcccgcagtgccgacgatcttcacg
gccatgctgcattatccgaagttcagatcctacgacgtttcctcgctgcgcttttgcatt
tccggcggcgctccgctgccgctcgaaatcaagctccagttcgaagcggtttcgggttca
aaagtggtcgaaggctatggcctctccgaggcttcgcccgtgctgacgtgcaatccgatc
gacaaggaccctgtcccgggctccatcggaccgccgctccccggcacgatcatctcgctc
cgcgacatcgacgatccgacgaaagaggtgccgcaaggggagcggggcgaactctgcgcc
aagggcccgcagatcatgaaaggctattggaagaagcccgccgagaccgaaaaacagttc
gtcgacggatttctgcggaccggcgacgtcgcgattatggaccagaacgggtatttctcg
atcgtcgaccggatcaaggacctgatcatctgctcgggctacaatgtctatccgcgccgc
atcgaggaagcgatctacgagcaccccgcggtcgaggaagtgaccgtgatcggcgtctcg
gatgcctatcgcggcgaagcgccgaaagccttcatcaaattgaaagccggcatgacggcc
accgcctccgacatcctgaagcatctcgaacccaagatctcgaaaatcgagatgcccgcc
gcgatcgagtttcgcgacagcctgccgaaaacgatgatcggcaagttgtcgaagaaggaa
ctcgccgccgaagagcgaagcaagaggggttag
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