Hyphomicrobium denitrificans 1NES1: HYPDE_34143
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Entry
HYPDE_34143 CDS
T02646
Name
(GenBank) ribonuclease III
KO
K03685
ribonuclease III [EC:
3.1.26.3
]
Organism
hdt
Hyphomicrobium denitrificans 1NES1
Brite
KEGG Orthology (KO) [BR:
hdt00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
HYPDE_34143
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hdt03019
]
HYPDE_34143
03009 Ribosome biogenesis [BR:
hdt03009
]
HYPDE_34143
03036 Chromosome and associated proteins [BR:
hdt03036
]
HYPDE_34143
Enzymes [BR:
hdt01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.3 ribonuclease III
HYPDE_34143
Messenger RNA biogenesis [BR:
hdt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HYPDE_34143
Ribosome biogenesis [BR:
hdt03009
]
Eukaryotic type
90S particles
RNase
HYPDE_34143
Prokaryotic type
rRNA processing factors
HYPDE_34143
Chromosome and associated proteins [BR:
hdt03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Microprocessor complex
HYPDE_34143
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonucleas_3_3
Ribonuclease_3
dsrm
DND1_DSRM
RM44_endonuclase
DSRM_2
Motif
Other DBs
NCBI-ProteinID:
AGK58500
UniProt:
N0BEH9
LinkDB
All DBs
Position
complement(2286847..2287554)
Genome browser
AA seq
235 aa
AA seq
DB search
MLRPRKFKELETKLGHRFKDPGLLERALTHASVRGGKIARFDNERLEFIGDRVLGLAIAE
ILNQQYPEASEGELARRYNRLVRGEACAKVARNIGLGAHLILSESEADSGGRDKTTILAD
AAEALLGAVFIDVGFEKARTVVRKLWQEQSEPVPEVAVDAKSALQEWAQGQGLALPKYTV
VSRKGPDHAPRFTAEVIIAGRAPAQGEGASKRIAEQAAATALLTREGEGGRLGDV
NT seq
708 nt
NT seq
+upstream
nt +downstream
nt
atgttgagacctcggaaatttaaagagcttgaaaccaagctcgggcaccgcttcaaggac
cctggccttttggagcgggcattgacgcacgcgagcgttcgcggcggaaaaattgcgcgc
ttcgacaacgaacgcctggaattcattggtgatcgcgtgctcggtctcgcaatcgctgag
atcctgaatcaacaatatcccgaagcgagcgaaggcgaactcgcccgccgctataaccgg
ctggtgcgcggcgaagcatgcgccaaggtcgcgcgcaacattggtctcggcgcacacctc
attctgtcggaaagcgaagccgacagcggtgggcgcgacaagacgacgattcttgccgac
gctgcagaggccctgctcggtgccgttttcatcgacgtgggtttcgagaaggcgcgcacc
gtcgttcgcaaactttggcaggagcagtcggagcctgtgccggaagtcgcggtcgatgct
aaatcggcgctccaggagtgggcgcaaggccagggtttggcattgccgaaatacacggtc
gtgtcgcgcaaagggccggatcatgcaccgcgcttcaccgccgaggtcatcatcgccggg
cgcgcaccagctcaaggcgaaggcgcatcgaaacgcatcgcggagcaagccgcagcgacg
gcgcttctgacccgcgagggcgaaggaggccgtcttggcgacgtctga
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