Hyphomicrobium denitrificans 1NES1: HYPDE_34518
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Entry
HYPDE_34518 CDS
T02646
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
hdt
Hyphomicrobium denitrificans 1NES1
Brite
KEGG Orthology (KO) [BR:
hdt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hdt03400
]
HYPDE_34518
Enzymes [BR:
hdt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HYPDE_34518
DNA repair and recombination proteins [BR:
hdt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
HYPDE_34518
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Ras_bdg_2
Motif
Other DBs
NCBI-ProteinID:
AGK58575
UniProt:
N0BEP3
LinkDB
All DBs
Position
2359917..2363033
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AA seq
1038 aa
AA seq
DB search
MAANVFTLPPGVPFLKALARAILNGDLPAPGGAAPDFLRLPNITLLLPTRRAMRAAREAF
LSAANAPAIIMPRIRPISEGEDDLSLISSLAGDGLSSIAALEQPPAIDPLDRTLVLMQLV
SHWRETMAQSESDRSSGSTPAQAARLAAELGKLMDDIERENVSLSGIKNLVPETYAEHWQ
KTVDFLKIVTEFWPAHLAANGITSPETRRNALILAEAKRIANLKRDEVVIVAGVTGSIPA
TVELMRAVAARSSGAIVLPALDQALDEPSWKAIVPNHPEHPQFGLKKLLDGLGVERGAVR
TLPGTELDITGRARTAFISEAMRPSSSTDKWHRYTATADKEQLENALADISLIEAPSAQD
EAETVALILREAVETPGQTAALVSPDRLLARRVAIRLEAWGIRVDDSAGRPFTKTVPGAF
LALIVGAVVSDFAPAETMALLRHPLCRLNFNPFDIRKFARALEISAFRTPYLGHGVEGIR
AALETAERDRAERKRMHPAARRLWPQDCDGARELVTRLATAFQPLTDLYATSGDRPLSAF
VRAHAKTAEALAALPDDDAAAANANPLWQGEAGEAASRFFAKLLDPETPPVEIRADDYAD
LYATLLARENVRERTAVHPRISIWGPFEARLQQPDVLILGSLNEGTWPEAAEPGAWLNRP
MRRDLGLPSPEEEIGRAAHDFTSLLGAKTIYLTRAEKVDGVPTVPSRWLMRTKALLKGMD
LESVLDADKPWLAWARARDRIDLSKRIAIKPPEPRPAVALRPRRMSVTDIERWIANPYAT
YARHILKLEPLPPLGASPDASLRGGLVHDVLSRFANAFPDRLPVDPLAELEKIASHVLES
YTGNARIAAFWMPRLKRFLSWFAEGEDKRRDGVRKVIAEISGSLVLAPTLEPFTLTARAD
RIDDKGSAVVITDYKTGAIPKQDWVLDGRSPQLPLEAAIALGEAGFPNLAGRSVESLRYI
RASGGEPAGEERAIKSDDIGALAEEARKGLERLIAEFDNPATPYRALRRPSYNYDYDAYA
QLARVAEWSAHIDEEAAS
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaatgtcttcacgcttccgcccggcgtgccattcctgaaggctcttgcacgt
gccatcctgaacggcgaccttccggcgcccggcggcgccgcgcccgattttctaaggcta
ccgaacatcacattgctgctgccgacacggcgtgcaatgcgcgcggcgcgcgaagccttc
ctgtcggcggcaaacgcacccgccatcatcatgcctcgcatccgaccgatctcggaagga
gaagacgatctttcgttgatctcgagtctcgcaggcgatggtctgtccagcatcgcggcg
ctcgaacaaccaccggctatagaccctctcgaccggacgctggtcctgatgcagctcgtc
agccattggcgtgagacaatggcgcagtcggagtccgaccgcagctcgggctcgacgccc
gcccaggctgcccgactcgccgccgagctcggcaagctcatggatgacatcgagcgcgag
aacgtttcgctatcgggcattaaaaacctggttccggaaacctacgccgagcactggcaa
aagaccgtggatttcctgaagatcgtcaccgagttttggcccgcgcatctcgccgccaac
ggcatcacctcacccgaaactcgccgcaatgccctgatcctcgccgaagcgaagcgtatc
gcgaacctcaaacgcgacgaggtcgtcatcgttgccggcgtaacgggctcgattccggcc
accgtcgaattgatgcgcgccgtcgcggcacgatcttccggcgccatcgtgcttcctgct
ctcgatcaagcgctcgatgagccaagctggaaggcaatcgttccgaaccatcccgaacat
ccgcagtttggcttgaagaaacttctggacggcctgggcgtcgaacgtggcgcggtgcgt
acgttgcctggaaccgagctcgatatcacgggccgggcgcggacagccttcatcagcgaa
gccatgcgtccatcatcctcgaccgataaatggcatcgctacacggcgacggccgacaaa
gagcaactcgagaacgcgcttgccgatatctcgctgatcgaagctccgtcggcgcaggac
gaagccgagaccgttgcattgattttgcgtgaagccgtcgaaacgccagggcagaccgcg
gctctcgtctcgccggaccgcctccttgcgcggcgcgttgcgatccggctcgaagcctgg
ggcatccgcgttgacgacagcgccgggcggcccttcacgaaaacagtgcccggcgccttc
cttgccctcatcgtcggtgctgtcgtgagtgattttgcacccgccgagacgatggcattg
ctgcgccatccgctctgcagattgaatttcaatccattcgacattcggaaatttgcacgt
gcacttgaaatcagcgcctttcgcacgccgtacctcggccatggcgtcgaaggcattcga
gcggcgctggagacagccgaacgcgatcgcgcggaaagaaaacgcatgcaccccgccgcg
cggcggctctggcctcaggactgcgacggcgcgcgcgagctggtgacccggttggctact
gccttccagcccttgactgatctctacgccacgagcggcgaccggcccctatcggcattc
gtgcgcgctcacgccaaaacagccgaagccctcgcagcgctacctgacgacgacgcggca
gccgcaaatgcaaacccactctggcaaggagaagccggagaagccgcgtcgcgctttttc
gcgaagcttttagaccctgaaacaccgccggtcgaaatccgcgccgacgattatgccgat
ctttacgcgacgctgctggcgcgagagaacgtgcgcgagcgcacggctgttcatccgcgc
atctccatctggggaccgttcgaagcgcgcctgcagcaaccggatgttctgatcctcggt
tctctcaacgaaggtacgtggccggaagctgcggagcccggagcatggctcaatcgcccg
atgcggcgcgatctggggttgccgtctcccgaagaggagatcggccgagccgcacacgac
ttcacatcgctgctcggggcaaaaacgatctacttgacgcgcgccgaaaaggtcgatggc
gtgccgaccgtcccgtcccgctggctgatgcgaacgaaagccctgctcaagggcatggat
ctcgaaagcgtactcgatgccgataaaccttggctcgcctgggcccgcgcgcgtgatcgt
attgatttgagcaaacgcatcgccataaagccgccggaaccgagacctgcggtggcgctg
cgaccgcgccgaatgagcgtcactgatatcgaacgctggatcgcaaatccttatgcgacc
tacgcgcgtcatatcctgaaactcgaaccgctgccgccgctcggagcatcgccggatgcg
agtctacgcggagggctcgtccacgacgtgctctcgcgttttgcaaacgcattccctgac
cgtctaccggtcgatccccttgccgaacttgaaaagatcgcgtcccatgttctggaaagt
tacaccgggaacgcacgcatcgctgccttctggatgccacgactgaagcggtttctctca
tggtttgcggaaggcgaagacaaacggcgcgacggcgttcgcaaagtcatcgctgagata
tctggaagcctcgtgctggcgccgacgctagaacccttcacgctcactgcacgcgccgat
cgtatcgacgacaagggttccgccgtcgtcatcaccgattacaagactggtgcgatacca
aagcaggactgggtgctggacgggcgctcgcctcagcttcccctcgaagccgccatcgcg
cttggagaagccggatttccaaatctcgcgggccgctccgtcgagtcccttcgctatatt
cgcgcctcaggcggcgaaccggcgggcgaagaacgcgcgatcaaatcagacgacatcgga
gcactcgcggaagaagctcgcaagggcctcgaacgcctgattgccgaattcgacaacccg
gcgacgccttaccgtgcgcttcgacgtccgagctataattatgactacgatgcctacgca
cagctggcgcgcgtcgccgaatggtccgcccatatcgacgaggaggcggcatcgtga
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