Hyphomicrobium denitrificans 1NES1: HYPDE_34523
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Entry
HYPDE_34523 CDS
T02646
Name
(GenBank) double-strand break repair helicase AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
hdt
Hyphomicrobium denitrificans 1NES1
Brite
KEGG Orthology (KO) [BR:
hdt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hdt03400
]
HYPDE_34523
Enzymes [BR:
hdt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HYPDE_34523
DNA repair and recombination proteins [BR:
hdt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
HYPDE_34523
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
DEAD
AAA_30
AAA_12
Motif
Other DBs
NCBI-ProteinID:
AGK58576
UniProt:
N0BDL8
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All DBs
Position
2362997..2366623
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AA seq
1208 aa
AA seq
DB search
MVRPYRRGGGIVNLETKRLSLDALRQDTDRHQRNAADPLASAWVKANAGTGKTHVLTLRV
LRLLLAGTSPEKILCLTYTKAAAAEMSRRVFDRLAGWVTADDATLEKEIGKVTGGEVSRE
MLELARRLFANAIETPGGLKVQTIHAFAERLLQRFPLESGVPPDFKILDDASAKELKARV
IEQTLLDATSASEAPLGRALDVIVRYATDAQFEKLISNAVEERRWLDVAHRRKPGSSVTL
EDVSAIETYLRRSLGVRAAIAVEDLHKECACVLSDNDLRELTVHLATGKASDTGYVPTLQ
MAAELADAQRRSEALSGYFLTAGGDPRKTLMTKALSSDKPGLNDRCLAAQQRFVALTSEL
KALTLIECSMALCAFAGIILQRYTEARRSAGALDFDDLILKTKSLLEGEGGQAQWVLYKL
DGGLDHILVDEAQDTSPEQWEIVKALAHEFFAGAGTRDGSPRTVFAVGDEKQSIYSFQGA
DPKMFADAGTRFAALARDAGLVWKPIELTMSFRTVTPVLAAVDAVFADAEKTPGLTAGGP
PPKHNAIRLGHAGLVEMWPTEKPDELAAADPWAPLSDTSERSPANRLAERIADTIRGWLD
RGERLASQGREIRAGDILILVRKRNPFAVPMVAALKRRGIAVAGSDRIALTDQIAVQDLM
ALGDFLILPEDDLALATVLKGPIFNFDDDDLLAIAPGRQNKTLWSALLDNTEAKPAYKAA
AETLKRWRAKADFTPPFEFFSSVLDRDGAREKMLHRLGPEAADVIDEFLDLALSYDDGTP
PSLTQFLAELRAIEPEVKRDMDHGRDEVRVMTVHGAKGLEAPIVFLPDTCTTASGDISAA
SLVRLSHLPRPDHIPEPVVWTVKGTSRIEAVSEARRRREAREHEERNRLLYVAMTRARDR
LYIAGFEGKKGRADFCWYEAISEALLPVAREIDTGDGRKVWRIETTQTAEAERPRGEKAR
QLENMERPSFALQRAQPEPKLSIPLAPSRLEPYAPDAEGEPIVSAKPDAATTYDAPSPLA
GNAEHRFLRGTLTHALLQHLPAVAVSDREPIAAAFVAKRGAILPRKARAGIVHETLAILS
SSDFAPLFGPNSIAEVPIAAVIPRPQGSGPALDLSGQIDRLAVTKDEVLIVDYKTNRPPP
SDVRFVADAYLYQLAAYRLALGEIYPGRRVRAALLWTDGPRLMEIPRDVLDSYQSRLWSL
DIQSLDGL
NT seq
3627 nt
NT seq
+upstream
nt +downstream
nt
atggtccgcccatatcgacgaggaggcggcatcgtgaacctcgaaacaaaacgactttca
cttgacgcattgcgccaggataccgaccggcatcagagaaacgcggccgatcccttggca
tccgcgtgggtcaaagccaacgccggaaccggcaagacgcacgttctgacgttgcgcgta
ttgcgcttgctgctcgccggaacgtcaccggaaaaaattctctgcctcacctataccaaa
gctgccgccgctgagatgtcgcgccgtgttttcgaccgcctcgccggctgggttacagcc
gatgatgcgacgctcgaaaaagaaattggcaaagtcactggcggcgaagtttcgcgcgaa
atgctggagttggcccggcgtctcttcgccaatgccatcgagacgccgggcggcctcaag
gttcagacgattcatgctttcgctgagcgcctgcttcagcgatttccgctcgaatccggt
gtgccgccggatttcaaaattctcgacgatgcctctgccaaggaattgaaagcacgtgtc
atcgagcagacgctgctggacgccacctcggcgtcagaagcgccgctcggccgcgccctt
gacgttatcgtccgttacgcgacggacgcgcagttcgagaagctgatcagcaatgccgtc
gaggaacgccgctggctcgacgttgcacaccggcgcaagcccggcagcagtgtgacgctg
gaagacgtgtcggcgatcgaaacgtatcttcgccgcagcttaggcgttcgtgccgcaatc
gctgttgaagatcttcacaaggaatgtgcgtgtgttctgtccgacaacgacctgcgggaa
cttacagtccacctcgcgacgggcaaggcaagcgatacaggttatgtgccgacgttgcag
atggctgccgaactggcggatgctcagcgccgctccgaagccctgtcgggctactttctg
accgcaggcggcgacccacgcaaaacactgatgaccaaggcgctgtcatccgacaagcct
gggctaaacgatcgctgcctggctgcgcagcaaagattcgttgcgttgacgagcgagctt
aaggctttgacactcattgaatgctctatggcgctctgcgcctttgcgggcatcattctg
caacgctacaccgaagcgcgacgcagcgcgggcgccctcgacttcgatgatttaattctg
aaaaccaaatctctgctcgaaggcgaaggcggccaggcacagtgggtgctctataaactc
gatggcggcctggatcatattctcgttgatgaagcgcaggatacgagcccagagcaatgg
gaaatcgtcaaagcgctggcgcacgaattttttgccggagcaggcacgcgtgacggttca
cctcgcacggtctttgccgttggagatgaaaagcaatcgatctattcgttccagggcgcc
gatccgaagatgttcgcggacgcaggcactcgtttcgcggccctcgcgcgcgatgccggg
cttgtctggaagccgatcgaacttacgatgtcgttccgcaccgtgacgcccgttcttgcc
gccgtcgacgcggtgtttgcagacgccgaaaagacgcccggtctaacggccggagggccg
ccgccgaagcacaacgctattcgcctgggccatgccggtcttgtcgagatgtggccgacg
gagaagccggacgaactcgcagccgccgatccgtgggcgccgttgtctgacacgagcgag
cgttcgcccgccaatcgtctcgccgaacgtatcgcggacaccatcagaggatggctcgat
cgcggcgaacgactggcttcccaaggtcgtgagatccgcgcaggcgatatcctgatcctg
gtgcgtaaacgcaatccgtttgcggtgccgatggtcgccgcattgaaacgacgtggcatc
gccgtagcaggctcggaccggatcgcgctgaccgatcagatcgccgttcaggacctgatg
gcactcggggacttcttgatcctgccggaagacgatctcgcgctggcgaccgttctgaaa
ggcccgatcttcaacttcgacgacgacgacctgctcgccatcgcgccgggacggcaaaac
aaaacgctgtggtcggcgctgctcgacaacacggaagcgaaacctgcttataaggccgcc
gcagaaaccctgaagcgctggcgcgccaaggccgacttcacgccacccttcgaatttttt
tcgagtgtgctcgatcgcgacggcgcccgcgagaagatgctgcaccgcctcggcccggaa
gccgccgacgtgatagacgaatttctcgatctcgcactgagctacgatgacggcacccca
ccttcgctcactcaatttcttgccgagttgcgcgccattgaacccgaggtgaaacgcgat
atggaccacggtcgcgatgaagtccgcgtcatgaccgtacacggcgcaaaaggactcgaa
gctccgatcgtgtttcttcccgacacctgcacaacggcgtccggtgacatctcggccgcg
agccttgtcaggctatcccatcttccgcgacctgatcacatcccggaacctgtcgtctgg
accgtcaaggggacgtcacggatcgaggccgtatccgaagcgcgccgccgccgcgaagcc
cgcgagcacgaggagcgtaaccgccttctctacgtcgcgatgacgcgcgcccgcgaccgg
ctttacatcgcaggcttcgagggcaaaaaaggccgggccgatttctgctggtacgaagcg
atatcggaagcgcttcttccggttgcgcgggaaatcgatactggcgacggcagaaaagtc
tggcgcattgaaacaacgcaaactgccgaagctgaaaggccgcgaggcgaaaaagcacgg
caactcgaaaatatggaaagaccttccttcgcgttacagcgcgcgcagccggagccgaaa
ctttccattccgctcgcgccatcgcgtctggagccctacgcaccggacgccgaaggcgaa
cctatcgtgtctgccaaaccggatgcagcgacgacatatgatgcgccgtcgccgctcgct
ggaaatgccgagcatcgcttcctacgcggaacgctgacgcatgcgttgctgcagcatctg
cctgccgtggcggtaagtgaccgtgaaccgattgcggcagcctttgtcgccaaacgcggc
gcgatacttccgcgaaaagcgcgcgctggcatcgtccatgagacactggcgatcctatcg
tcgtcggacttcgctccgctgtttggacctaatagcattgccgaggttccgattgccgca
gttattccgcgcccgcaaggctccggcccggcgctcgacctgtccggccagatcgaccga
ctcgcggtaacgaaggacgaggtgctgatcgtagactacaagacgaaccggccgcctccg
tcggacgttcgatttgtcgcggatgcctatctttaccagcttgcagcctacaggctggct
ctcggcgagatttatccgggtcgccgggtacgggccgccctgctctggaccgatggaccg
cgcctgatggaaatcccgcgggacgtgctcgacagctaccagtcccggctttggagctta
gacattcaaagtcttgacggtctgtaa
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