Hyphomicrobium denitrificans 1NES1: HYPDE_36278
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Entry
HYPDE_36278 CDS
T02646
Name
(GenBank) polynucleotide adenylyltransferase region
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
hdt
Hyphomicrobium denitrificans 1NES1
Pathway
hdt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hdt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYPDE_36278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hdt03019
]
HYPDE_36278
Enzymes [BR:
hdt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
HYPDE_36278
Messenger RNA biogenesis [BR:
hdt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HYPDE_36278
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol
PolyA_pol_RNAbd
NoBody
Motif
Other DBs
NCBI-ProteinID:
AGK58927
UniProt:
N0B9K8
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All DBs
Position
2706401..2707657
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AA seq
418 aa
AA seq
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MSQITARGPRITAEWLNAKPLRKVFAAFETAHIDVCVVGGAIRNSLIDRPVTDVDLATPA
APETIIRLAKDAGLDAHPTGIEHGTVTLVSDGVGFEVTTLRRDIETDGRHATVAFTQSWE
DDAKRRDFTINALYCDADGMIYDPIGGLDDLRRRRVRFIGDAEARIREDYLRILRFFRFS
AQYGKGQLDAVGLAAAIALKQGLTQLAAERIRAEFLKLLAAPFAAEVVLTMHESGILKLI
LPGMTDPGRLARLQAIEANLGQPPDVICGLAALAVSNPAKVDALAQRLRLSNAEAAALKT
AAIVNPDIDPAQPDTAARAVLYHLGPEAFRRAVYVSWARSGAAATDPAWRRRALLADRWS
PPKMPFGGSDVLALGVPPGPAVGDVLKAFETWWVASDFIPDRSEQAAKLKALAASAVH
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagatcaccgccagaggtccgcgcatcaccgccgagtggcttaatgcgaaaccc
cttcgcaaagtcttcgctgcattcgaaaccgcacatatcgacgtttgcgtcgtcggcggc
gcaattcgaaattcgctgatcgatcgccctgtcaccgatgtcgatctcgcaacacctgcc
gcccccgaaaccatcattcgacttgcgaaagacgccggtctcgacgcgcatcctacaggt
atcgaacacggcacggtcacgcttgtttcggatggtgtcggcttcgaagttacgacgctt
cggcgcgatatcgaaaccgatggacgccatgcgacggtcgcgttcacccaatcgtgggaa
gatgacgccaagcgccgcgatttcacgatcaacgcgctttattgcgatgccgatggaatg
atctacgatccgatcggcggcctcgacgatcttcgccgccgccgcgtgcgattcatcgga
gatgcggaagcccggattcgggaagattacctgcgcatccttcgcttttttcgcttcagc
gcccagtacggcaaaggccagctcgatgcggtcggcctggcggctgcgatcgcgctgaaa
cagggcctgactcagctcgcagccgaacgtattcgcgccgaattcctgaagttgcttgcg
gcaccttttgccgccgaggtcgttctgacgatgcacgagagcggcatcctgaaactcatc
cttcccggcatgaccgatccggggcggctggcgcgcctacaggcgatcgaggcgaacctc
ggccagcctccggatgtgatctgcgggcttgcggcactcgccgtttccaatccggcaaaa
gtggacgcgcttgcacaacggcttcgtctttcgaacgccgaagcagccgcactcaaaacg
gccgctatcgttaatccggacatcgatccggcacagcccgacaccgctgcccgcgccgtt
ctctaccatcttggtccggaggcctttcggcgagccgtctacgtctcgtgggcgcggtcg
ggagccgccgcgaccgatcccgcctggcgcaggcgagcgcttctggcggaccgctggagc
ccgccaaagatgccgttcggcgggagcgatgtccttgccctcggcgtacctccgggaccg
gctgtcggcgatgtcctcaaggccttcgaaacgtggtgggtggcgagcgattttatcccc
gatcgctcggagcaggcggcaaagctcaaagctcttgcggcaagcgccgttcattaa
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