Hyphomicrobium denitrificans 1NES1: HYPDE_36443
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Entry
HYPDE_36443 CDS
T02646
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
hdt
Hyphomicrobium denitrificans 1NES1
Pathway
hdt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hdt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYPDE_36443
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hdt03019
]
HYPDE_36443
03400 DNA repair and recombination proteins [BR:
hdt03400
]
HYPDE_36443
Enzymes [BR:
hdt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HYPDE_36443
Messenger RNA biogenesis [BR:
hdt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HYPDE_36443
DNA repair and recombination proteins [BR:
hdt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HYPDE_36443
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
RecQ_Zn_bind
HRDC
Helicase_C
HTH_40
ResIII
HemN_C
Motif
Other DBs
NCBI-ProteinID:
AGK58960
UniProt:
N0BFT7
LinkDB
All DBs
Position
2741117..2743303
Genome browser
AA seq
728 aa
AA seq
DB search
MPAFAAPLSLPFASATDDAMSLARAKLEDVFGYKGFRPLQGDIIDTILRGGDCLALMPTG
GGKSLCYQIPSLVRPGTGIVVSPLIALMQDQVDALRDLGVKAAFLNSTQDRSTQDQIERQ
FAADALDLLYVAPERLVQERTLALFERADIALFAIDEAHCVSQWGHDFRPEYRQLKILAQ
RFPSVPRIALTATADERTRQDIIAELSLENARSFIASFDRPNIRYTIAELGSGSARERLW
QFIEAEHSSDAGIVYCLSRKSVEETAAWLCSKGRKALAYHAGLEAPVRAAAQAKFLTEEG
LIIVATIAFGMGIDKPDVRFVAHLNLPKSIESYYQETGRAGRDGEAANAWMAYGLQDIVQ
LRQWIGQSEGPEAFKTVQRQKLDALVGLAEMPGCRRQALLAYFGEMRSEPCGNCDNCLSP
PHTEDGTIIAQKALSAVYRTGQRFGVTYLADVLIGTADERVLRNGHDRLSVFGIGKDVPV
STWKGLFRQLTAQGYLTGDDEGMGSLVLTERARPLLRGEERFLMRVTRPKSKVAKKRGAS
LASKVTRENQPLFDALKALRQKLAAAAKLPPYVVAQDRTLIELAEKRPDTETALHDILGL
GASKIARYGAAFMQVISQFKKHPVLTNRLSASVNATLAAHLRGLDAEQIASERGLEVATV
YGHLAEAIEAGLIGAEDALHLDPAERDEIEAAFDRCETRDTGKLGPAFAALDGRYNYGIL
KCLLADAG
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgccggccttcgccgcgccgctttctctaccgtttgcttccgctaccgacgacgccatg
tccctcgcgcgcgccaagctcgaggatgttttcggctacaagggttttcgcccgctgcag
ggcgacattatcgacaccattctgcgtggcggcgattgcctcgcgttgatgccgacgggc
ggcggcaagtcgctttgctatcagatcccgtcgctggtccggcccgggaccggcatcgtt
gtctcgccgctcatcgcgttgatgcaggatcaggtcgatgcgctgcgcgacctcggcgtc
aaagcggcatttctgaattcgacgcaggatcgcagcacgcaggatcagatcgagcgtcag
ttcgcggctgatgcgctcgatctcctctacgttgcgccggagcggctggtgcaggagcgc
acgctcgcactgttcgagcgtgccgacattgcgctttttgctatcgatgaagcgcattgc
gtctcgcagtggggacatgatttccggcccgagtaccggcagctcaagattcttgcgcag
cgctttccgagcgtgccgcgaatcgcgttgacagcgaccgcggacgaacgaacgcggcaa
gacatcattgcggagctttcgctcgaaaatgcccggagcttcattgcgagtttcgaccgg
ccgaacatccgctatacgatcgccgaactcggcagcggcagcgcgcgggagcggctttgg
caattcatcgaagccgagcattcatcggacgcagggatcgtctattgcctgtcgcgcaag
tcggttgaggaaacggccgcgtggttatgctccaaggggcgcaaggcacttgcctatcat
gcgggcctcgaagcgcccgtccgcgcggcggcacaagcgaagtttctgacggaagaaggg
ctgatcatcgtcgcgaccattgccttcggcatgggcatcgacaaacccgacgtgcgcttc
gtcgcacatctcaatttgccgaagtcgatcgagtcttattatcaggagacgggccgggcc
ggccgcgatggtgaagccgcgaatgcctggatggcctatggcctgcaggatatcgtccag
cttcggcaatggatcgggcaatcggaaggcccggaagccttcaagacagtgcagcgacag
aagctcgacgcgctcgtcggacttgcggagatgccgggctgccgccggcaggcattgctc
gcctatttcggagagatgcgctcggagccgtgcgggaactgcgacaactgcctcagcccg
ccgcataccgaggatggcaccattatcgcccagaaagccttgtcggccgtttacaggacg
ggtcagcgtttcggcgtgacctatcttgccgacgtccttatcggaacggcagacgagcgc
gtgctgcgcaacggccatgaccgtttgtctgtattcggcattggcaaagacgtgccggtt
tcgacctggaaggggcttttccgacaactgacggcgcagggctatctgaccggcgacgat
gaaggcatgggctcgctggtgctgaccgagcgtgcgcggcctctgcttcgtggcgaggag
cgtttcctgatgcgcgtgacgcggccgaaatcgaaggtcgccaagaagcgtggagcatcg
ctggcatcaaaggtcacgcgggaaaatcagcccttgttcgatgcgctgaaggccttgcgg
cagaaacttgcggctgcggcgaaacttccgccctacgtcgtggcgcaagaccgtacattg
atcgagcttgccgagaaacggcctgatacggaaacggccttgcacgacatcctcggactc
ggcgccagcaagatcgcgcgatatggcgcggcgttcatgcaggtcatttcgcaattcaag
aagcatccggttttgaccaaccggctatcggcaagcgtgaatgcaacgctcgcggcgcat
ctcagggggcttgacgccgagcagatcgcatccgagcgcgggctcgaggttgcgaccgtc
tatggtcatctcgccgaggcgatcgaggcgggattaatcggtgcggaggatgcgcttcac
ctcgatcccgccgagcgcgacgagatcgaagcggcgttcgatcgctgcgagacgcgggat
acgggaaaactcggacctgcatttgcagcgctcgacgggcgctacaattacggcattctc
aaatgcctgctcgctgacgccggctag
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