Hyphomicrobium denitrificans 1NES1: HYPDE_37393
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Entry
HYPDE_37393 CDS
T02646
Name
(GenBank) DNA polymerase III subunits gamma and tau
KO
K02343
DNA polymerase III subunit gamma/tau [EC:
2.7.7.7
]
Organism
hdt
Hyphomicrobium denitrificans 1NES1
Pathway
hdt03030
DNA replication
hdt03430
Mismatch repair
hdt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hdt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HYPDE_37393
03430 Mismatch repair
HYPDE_37393
03440 Homologous recombination
HYPDE_37393
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hdt03032
]
HYPDE_37393
03400 DNA repair and recombination proteins [BR:
hdt03400
]
HYPDE_37393
Enzymes [BR:
hdt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HYPDE_37393
DNA replication proteins [BR:
hdt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HYPDE_37393
DNA repair and recombination proteins [BR:
hdt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HYPDE_37393
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_gamma3
DUF3646
DNA_pol3_delta2
DNAX_ATPase_lid
AAA
AAA_22
AAA_30
RuvB_N
AAA_5
AAA_16
AAA_14
AAA_18
DNA_pol3_delta_C
DUF815
AAA_19
AAA_assoc_2
PIF1
SRP54
NTPase_1
TIP49
Sigma54_activ_2
nSTAND3
SKI
TsaE
Motif
Other DBs
NCBI-ProteinID:
AGK59150
UniProt:
N0BG96
LinkDB
All DBs
Position
complement(2941656..2943704)
Genome browser
AA seq
682 aa
AA seq
DB search
MGWRRTNSSPTGSGPEGSSPNDRKSGRSPASFDCAPRPNGLGSGAGFGQGSARVALLPRP
LGGSIDPENMAKKKSDTSEGVAASPGAEAAKPYVVLARKYRPATFDDLIGQSAMVTTLRN
AFASGRIAQGYMLTGVRGVGKTTTARILARALNYEAPGFDKPTIDMPGLGVHCKDIMEGR
HPDVLEMDAASNTGVDNIREIIESAQYTPLVARTKVFIIDEVHMLSKGAFNALLKTLEEP
PAHVRFIFATTEIRKVPVTVLSRCQRFDLRRVEQPVLAAHFKKISEAEGAEADSDALQLI
ARAAEGSVRDGLSILDQAIAMGEGHVTAMSVRDMLGLADRARIFDLAEAIFRGDLPAALN
GFSSLHRDGAEAQEVIADLAEAVHAIARVKAVGEEPASEGLTAEEKKRCSDLAARLSMPY
LSRAWQMLIKGLEDVGRAPNPDVAAEMVLIRLAYTADLPTPDELIKSLGGAALPARRPAL
APAETRTPEARPTVNTTTTAPSAQQADSETDESFDFDSDDGQLDDGFGDAIEDDELASPA
PRGSATPDPRSFAEVVALVGEKRDAKLKIHLEDHVSLVKFDAVAGSIDIFLLPDAPPELA
NDLREKLNLWTGRRWVVVLSKEAGQKPIGVVRREREAAEFEQLKAHPAVRAVLQAFPEAK
IEVRPLAGGATGTDEDKESEAG
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
ttgggctggcggcggacgaattcgtcgccaaccgggtcaggtccggaaggaagcagccct
aacgatcggaagtcgggtcgttcgccagcctcttttgattgcgcgcccaggccgaacggc
ctcggcagcggcgcaggttttggacaaggttcggcgcgggtcgccttgctccctcgccct
ttgggcggaagtatcgatccggagaacatggccaaaaagaaatcagatacgtctgagggc
gttgcggcctcacccggtgccgaggcggcgaagccgtatgtcgtgctcgcgcgcaagtat
cgtcctgcgaccttcgatgatctgattggccagtcggcaatggtgacgacgctccggaac
gccttcgcgtcggggcgcatcgcgcagggttacatgttgaccggcgtgcgcggcgtcggc
aagacgacgaccgcccgcattcttgcacgcgctctgaattacgaagcgccgggtttcgat
aagccgaccatcgacatgccggggctgggcgtccactgcaaggacatcatggagggccgt
catccggacgtgctcgaaatggacgctgcgtccaacaccggcgtcgacaacatccgcgag
atcatcgaaagcgcgcaatatacgccgctcgtcgcgcgcacgaaggtcttcatcatcgac
gaggttcacatgctgtccaagggcgcgttcaacgcgctgctgaagacgctcgaagaaccg
cccgcgcacgtccgcttcattttcgcgacgacggagatccgcaaagtcccggtcacggtg
ctgtcgcgttgccagcgcttcgatctgcgtcgcgtcgagcagccggtacttgccgcgcat
ttcaagaagatttccgaggccgaaggcgcggaagcagattccgacgctttgcaattgatc
gcccgcgccgccgaaggatcggtgcgcgacggcctttcgatcctggaccaggcgattgcg
atgggcgagggccacgtcacggcaatgagcgttcgcgacatgctgggcctggccgatcgc
gcgcgtatcttcgatttggccgaagcgattttccgtggcgatcttccagccgcgctcaat
ggattttccagcctgcatcgcgacggcgccgaagcccaagaggtcatcgccgatcttgcg
gaagcggtgcacgccatcgcccgcgtcaaagctgtcggtgaagagccggcgagcgagggc
ttgacggcggaagagaagaaacgctgcagcgatctcgcggcacggctctcgatgccctat
ctgtcgcgcgcttggcagatgctgatcaaaggcctcgaagatgtcggccgcgcgccgaac
cccgatgtcgcggccgagatggtcttgatccggctcgcctatacggccgacctgccgacg
cctgacgaattgatcaagagcctcggcggcgccgcgcttcccgcccgccgtccggcgcta
gcaccagcagaaacgcgtacgcctgaagcgcggccgaccgtcaacacgacgacgactgct
ccgagtgctcagcaagcggatagcgagacggacgagtctttcgatttcgacagcgacgat
ggccagcttgatgatggcttcggcgatgcgatcgaagacgatgaacttgcgtcacccgcg
ccgcgcgggagtgcaacccccgatccgcgctcttttgctgaggtcgtggcgcttgtcggc
gaaaagcgcgacgcaaaactcaaaatccatctcgaagaccacgtcagcctcgttaagttc
gacgcggtggcgggctcgatcgatattttccttttaccggatgctccgcccgagcttgcc
aacgatctccgcgaaaagctcaatttgtggacggggcggcgatgggtcgtggtgctttcg
aaagaggcgggccagaagcccataggcgtcgtgcgccgcgaacgcgaagccgccgagttc
gaacagctcaaggcgcatcccgccgtgcgcgccgtgcttcaggcatttcccgaggcgaag
atcgaagtgcgcccattagccggtggggcgaccggtaccgacgaagataaagagagcgaa
gccggttga
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