Hyphomicrobium denitrificans 1NES1: HYPDE_39688
Help
Entry
HYPDE_39688 CDS
T02646
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
hdt
Hyphomicrobium denitrificans 1NES1
Pathway
hdt03030
DNA replication
hdt03430
Mismatch repair
hdt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hdt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HYPDE_39688
03430 Mismatch repair
HYPDE_39688
03440 Homologous recombination
HYPDE_39688
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hdt03032
]
HYPDE_39688
03400 DNA repair and recombination proteins [BR:
hdt03400
]
HYPDE_39688
Enzymes [BR:
hdt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HYPDE_39688
DNA replication proteins [BR:
hdt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HYPDE_39688
DNA repair and recombination proteins [BR:
hdt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HYPDE_39688
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
DNA_pol_A_exo1
RNase_H_2
DEDDh_C
Motif
Other DBs
NCBI-ProteinID:
AGK59606
UniProt:
N0BGQ5
LinkDB
All DBs
Position
complement(3397569..3398318)
Genome browser
AA seq
249 aa
AA seq
DB search
MARLKFPGIDAAMREIVLDTETTGLDTKNGDRLIEIGGVEIINRIPTGIEFHRFINPERD
VPLEAQKVHGISTEFLIGKPLFRDVVRDFLAFIGDDVLVIHNAQFDINFLNHELGLLGEK
PLSFDRVVDTLALARRRHPAGPNSLDALCKRYGIDNSQRTKHGAIVDSLLLAEVYVELLG
ERQATFGLQTVGSSASLGERRNGKRTTAKVRPEPLPSRLTEADIAAHHAFIGKMGVKAIW
HRFWGTVSS
NT seq
750 nt
NT seq
+upstream
nt +downstream
nt
ttggcgcgactgaaatttccggggattgacgctgcgatgcgcgagatcgtgctcgatacc
gaaacaacgggtctcgatacgaaaaatggtgaccgcctgatcgaaatcggcggtgtcgag
atcatcaatcgcattcccacggggatcgaatttcaccgcttcatcaatcccgaacgggac
gtaccgctcgaggctcagaaagttcacggcatttcgacggaatttctgatcggcaagccg
ctcttccgcgacgttgtccgcgattttctcgccttcatcggcgacgacgtgctcgttatt
cacaacgcgcagtttgacataaacttcttgaaccacgagttgggtctgctcggcgaaaag
ccgctgagcttcgatcgcgtcgtcgacacgcttgctctggcgcggcgccgccatccggcc
ggtccgaattcactcgacgcgctctgcaagcgctacgggatcgacaattcccagcgcacg
aagcacggtgctatcgtcgatagtctgcttctcgctgaagtctatgtcgaattgctcggt
gagcgtcaggcgacgttcgggcttcagaccgtaggtagcagcgcttcgctcggcgaacgc
cgcaacggcaagcgaacaacagcgaaggtgcggccggagccgctgccgtcaagactgacc
gaagctgacatcgccgcgcaccacgccttcatcgggaagatgggcgtcaaagcgatttgg
catcgcttctggggaacggtttcgtcctga
DBGET
integrated database retrieval system
