Hyphomicrobium denitrificans 1NES1: HYPDE_39743
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Entry
HYPDE_39743 CDS
T02646
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
hdt
Hyphomicrobium denitrificans 1NES1
Pathway
hdt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hdt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYPDE_39743 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hdt03021
]
HYPDE_39743 (rho)
03019 Messenger RNA biogenesis [BR:
hdt03019
]
HYPDE_39743 (rho)
Transcription machinery [BR:
hdt03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HYPDE_39743 (rho)
Messenger RNA biogenesis [BR:
hdt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HYPDE_39743 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_22
NACHT
AAA_25
S1CSD-TOTE-2
AAA
Fungal_virus_P2_C
Spore_III_AA
Motif
Other DBs
NCBI-ProteinID:
AGK59617
UniProt:
N0BBI6
LinkDB
All DBs
Position
3406267..3407523
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AA seq
418 aa
AA seq
DB search
MKLEDLKRKSPAELVTFAEETGVENASTLRKQELMFATLKQLATQETEITATGVVEVLQD
GFGFLRSPEANYLPGPDDIYVSPSQIRRFALRTGDTVEGQIRSPKDGERYFALLKVSNIN
FEDPEKAKHKSHFDNLTPLYPTKWLKLEIEDPTIKDLSSRVIDIVSPLGKGQRALIVAPP
RTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPPSRHV
QVSEMVIEKAKRLVEHKRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDSNALQRPKRF
FGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRKVSDKRVFPAIDV
ARSGTRKEDLLVPRDQLKKVYVLRRILNPMGTMDAIEFLIDKLRSTKTNGEFFQSMNT
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcgaggatctgaagcggaaatctcccgccgagcttgtgacctttgccgaagag
accggggtcgagaatgcctcgaccttgcgtaagcaggaattaatgttcgcgacgctgaag
cagctcgcgacgcaggaaaccgaaatcaccgcgaccggcgtcgtcgaggttctgcaggat
ggtttcggctttttgagatcgccggaagccaactatctccctggtcccgacgatatctat
gtgtcgccctcgcagatccgccgctttgcgctcaggacgggcgatacggtcgaaggccag
atccgctcgccgaaagacggcgagcgctatttcgcccttctcaaggtttcgaacatcaat
ttcgaagatcccgaaaaagccaagcataagagccacttcgacaacctgacaccgctctat
ccgacgaagtggctgaagctcgaaatcgaagatccgacaatcaaggacctgtcttcccgc
gttatcgacatcgtctcgccgctcggcaaaggccagcgcgccctgatcgttgcgccgccg
cgtaccggcaagactgtgctgctgcagaatatcgcgcactcgatcacggcgaaccatccg
gaatgctatctgatcgttctgctgatcgacgaacgtccggaagaagtcaccgacatgcag
cgctcggtcaaaggtgaggtgatctcctcgaccttcgacgagccgccgtcacggcacgtg
caagtgtcggagatggtgatcgagaaggctaagcgtctcgttgagcataagagggatgtt
gttattctcctcgactcgatcacgcgcctcggtcgtgcctataacacggttgtgccgtca
tcgggcaaggttctgaccggcggtgtcgactcgaatgcgttgcagcggccgaaacggttc
ttcggtgcggcccgcaacatcgaggaaggcggctcgctgaccatcatcgcgacggcgctg
atcgacaccggctcgcgcatggacgaagtcatcttcgaagagttcaagggtacaggcaac
tcggaaatcatcctggaccgcaaggtctccgacaagcgtgtgttcccggcgatcgatgtg
gcgcgctccggtacgcgcaaagaggatctgctggtgccgcgcgatcagctcaagaaggtt
tatgtcctgcgccgcatcctcaacccgatgggcacgatggatgcgatcgagttcctgatc
gacaagcttcgctcgacgaagacgaacggcgagttcttccagtcgatgaacacgtaa
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