Hyphomicrobium denitrificans 1NES1: HYPDE_39803
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Entry
HYPDE_39803 CDS
T02646
Symbol
holA
Name
(GenBank) DNA polymerase III subunit delta
KO
K02340
DNA polymerase III subunit delta [EC:
2.7.7.7
]
Organism
hdt
Hyphomicrobium denitrificans 1NES1
Pathway
hdt03030
DNA replication
hdt03430
Mismatch repair
hdt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hdt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HYPDE_39803 (holA)
03430 Mismatch repair
HYPDE_39803 (holA)
03440 Homologous recombination
HYPDE_39803 (holA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hdt03032
]
HYPDE_39803 (holA)
03400 DNA repair and recombination proteins [BR:
hdt03400
]
HYPDE_39803 (holA)
Enzymes [BR:
hdt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HYPDE_39803 (holA)
DNA replication proteins [BR:
hdt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HYPDE_39803 (holA)
DNA repair and recombination proteins [BR:
hdt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HYPDE_39803 (holA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HP_1247_M
RPT
PchR_N
Motif
Other DBs
NCBI-ProteinID:
AGK59629
UniProt:
N0B7L4
LinkDB
All DBs
Position
complement(3419688..3420731)
Genome browser
AA seq
347 aa
AA seq
DB search
MVAIKAHLADSFMKSPPPRLAAALFFGSDPGLVGERSATLARALAERENPPGEILRLDDA
ELDEDPGRLETELQMRPMFSSRRIVRAAAGRRISAQLLKPLLGAPLEGLLVVEAGNLKPD
DALRGLFEKTENCFAVACYPDSAADIDSLISDVLSSFSLSIEGDARTLLQSRLGADRALS
RAEIEKLALHSLGGSVITLQDVENVVGDASDLALERIAEAAAEGRTATAMTDFGRALASG
ESAQTIILVTQRYFLKLHKVRSDVDSGQRLDDALKAMRPPIFFKQRDAFARQIRNWPRPQ
LDQALRRIAETAKSARLSNRLEDLYAERLLLALASMAATQLAASPRR
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atggtcgccatcaaggctcatctggccgattccttcatgaaatcgccgccgccgcgtttg
gcggccgcactgttcttcggctccgacccgggacttgtcggcgagcgctcggcaaccttg
gcacgcgccctcgccgaacgcgaaaatcctcccggggagattctcaggctcgatgatgcg
gaactcgacgaagatccgggccgccttgaaaccgaattgcaaatgcggccgatgttctcc
tcccgccgcatcgttcgcgccgctgccgggcggcgcatctcggcacagctcctgaaaccc
cttctcggcgccccgctcgaaggcctgcttgtcgtcgaagccggtaacctcaagccggac
gatgcgctgcgcgggctgttcgagaaaaccgaaaactgctttgccgtcgcctgctatccc
gacagcgccgccgacatcgacagtctgatttcagacgttctgtcgtcgttctccctctcg
atcgaaggcgatgcgagaaccttgctgcaatcccgcctcggcgccgacagagcactgtcg
cgagcggagatcgaaaagctggcgctccacagcctgggaggctcggtgattacgctgcag
gacgtcgagaacgtcgtgggcgacgcctccgatcttgcgctcgaacgcatcgcggaagcc
gccgccgaaggacggaccgcaaccgccatgaccgacttcggccgcgcgctcgcatcgggc
gaaagcgcgcagaccatcattctcgtgacgcagcgctacttcttgaaactccacaaagtg
cgcagtgacgtcgactccggccaacgcctcgacgacgccttgaaggccatgcggccgccg
atcttcttcaaacagcgggacgccttcgctcgccagatccgtaactggcctagaccgcag
ctcgaccaggccctacggcgcattgcggaaacggccaaatctgcccgcctgtcaaatcgg
cttgaagacctttacgccgagcgcctgctcctggccctcgcctcgatggctgccacccag
cttgccgcgtctcctcgccgctaa
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