Hyphomicrobium denitrificans 1NES1: HYPDE_41593
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Entry
HYPDE_41593 CDS
T02646
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
hdt
Hyphomicrobium denitrificans 1NES1
Brite
KEGG Orthology (KO) [BR:
hdt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hdt03016
]
HYPDE_41593 (truB)
Enzymes [BR:
hdt01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
HYPDE_41593 (truB)
Transfer RNA biogenesis [BR:
hdt03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
HYPDE_41593 (truB)
Prokaryotic type
HYPDE_41593 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Phage_attach
Motif
Other DBs
NCBI-ProteinID:
AGK59986
UniProt:
N0BHS5
LinkDB
All DBs
Position
3748160..3749080
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AA seq
306 aa
AA seq
DB search
MGRRKKGLPVHGWLVLDKPANMTSTQAVGIIRRVFNAQKAGHSGTLDPLATGILPIALGE
ATKTVSFAVDGEKAYRFTVRWGTETETDDTEGAVTKTSDQRPDRASIEALLSQFHGEIMQ
VPPAYSAIKVDGARAYDLARDGETVVLEARPVFIDSLQLVDTPDAATSVFEARCGKGTYV
RALARDMGRLLGCYGHVIALRRTQVGPFDEAIAVTMDELMAASDSGDPEQLSRLLQPVEA
ALADLPELLVSQSDAASLARGQTVLIRGRDAPILSGPAYATSKGRLVALGELAKGALHPT
RVFNLG
NT seq
921 nt
NT seq
+upstream
nt +downstream
nt
atgggacgccgcaaaaagggattgccggttcacggctggctcgtgctcgacaaaccagcg
aacatgacgtcgacacaggccgtcggcatcatacggcgcgtattcaatgcgcagaaggct
gggcattcgggaacgctcgatccgctcgcgacgggtatcctgccgattgcgctcggggag
gcgacgaaaaccgtatcgttcgcggtcgatggcgagaaagcctatcgcttcaccgtgcgc
tggggcacggagaccgagacggacgacaccgaaggcgcggtgacgaaaacgagcgatcag
cgtccggatcgcgccagtatcgaagcactgctgtcgcagtttcacggcgagatcatgcag
gtgccgcctgcctattcggcgatcaaggtcgatggcgcgcgcgcctatgatctggcgcgc
gacggagagacggtcgtgctcgaagcgcggcccgtcttcatagacagcttgcaattggtc
gatacaccggacgccgcgacgagcgtgttcgaggcgcgctgcggcaagggaacgtatgtg
cgtgccctggcgcgcgacatgggtcgccttctcggctgctacgggcatgtcatcgctttg
cgccggacgcaggtcggcccattcgacgaagccatcgcggtcacgatggacgagctgatg
gctgcgtccgattccggcgaccccgaacagctttcgcgattgctgcagcctgtcgaagcg
gcgcttgccgatctgccggagctgctcgtgtcgcagagcgatgcggcaagtctggcgcgc
gggcaaacggttctgatccggggacgcgatgcgccgatcctgtcggggcctgcttatgca
acttccaaggggcggcttgtcgcgctcggtgagcttgcaaaaggtgcgcttcaccccacc
cgcgtttttaacctcggttga
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