Haemophilus ducreyi: HD_0551
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Entry
HD_0551 CDS
T00135
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
hdu
Haemophilus ducreyi
Pathway
hdu03030
DNA replication
hdu03430
Mismatch repair
hdu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hdu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HD_0551 (dnaE)
03430 Mismatch repair
HD_0551 (dnaE)
03440 Homologous recombination
HD_0551 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hdu03032
]
HD_0551 (dnaE)
03400 DNA repair and recombination proteins [BR:
hdu03400
]
HD_0551 (dnaE)
Enzymes [BR:
hdu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HD_0551 (dnaE)
DNA replication proteins [BR:
hdu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HD_0551 (dnaE)
DNA repair and recombination proteins [BR:
hdu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HD_0551 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AAP95487
UniProt:
Q7VNI3
LinkDB
All DBs
Position
complement(419178..422654)
Genome browser
AA seq
1158 aa
AA seq
DB search
MTQPRFVHLKVHSDFSMINGLAKVKALVKTAAAKQMAAMALTDFSNFCGLVKFYGESLTA
GLKPIIGADIYVRSDPTSEDIFELTLLAKNNQGYHNITVLLSRAYQQGYVEFPIVEKAWL
AELNEGIIVLSGGRSGDVGKALLKENEQEAATLVAFYQQYFADHYYLSLCRTGRSDEERY
LQQAVQFAKKYQLPLVAVNDVVFLKEDDFDAHEIRVAIHDSYTLDDPKRPQKYSPQQYFR
SEEEMCALFADLPQALMNSIQIAMRCNVTIRLGEYFLPNFPTGELSTEDFLIKKSQEGLE
ERLAFLFPDAETRKNKRSVYDERLQVELDVINQMGFPGYFLIVMEFIQWSKDNDIPVGPG
RGSGAGSLVAYALKITDLDPLQFDLLFERFLNPERISMPDFDVDFCMDGRDHVIEHVADT
YGRQAVSQIITFGTMAAKAVIRDVGRVLGHPYNFVDRISKLIPADPGMTLAKAFEAEPKL
PELYNADEEVKDLIDMARKLEGVTRNAGKHAGGVVIAPTAITDFSPLYCDSEGLHPVTHF
DKNDVEYAGLVKFDFLGLRTLTIIKWALEMINQRLTREGKPPIRIENIPLDDKPSFKLLL
AAKTTAVFQLESRGMKDLISRLKPDCFEDIIALVALFRPGPLESGMVQNFIDRKHGIEEV
SYPDAQYQHECLKPILEPTYGIIVYQEQVMQIAQELAGYTLGSADLLRRAMGKKKPEEMA
AQRDIFEKGAIEKGIDGQLAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAE
FMAAVMTSEMDNTDKIVGLYDECINMGLTVVPPDVNSGKHRFSVNEKGQIVYGLGAIKGV
GEGPIEAILEARNKGGIFKDLFDLTARVDLKKINRRTFESLIMSGAFDKLGPHRAALMKN
LEDALKASDQHSKMEALGQSDMFGVLTETPEQVQKAYANTPKWSEQAVLEGERTTLGLYL
SGHPIGRFLKELAHYAPTRLNELQPTRRGQMVTVAGIIVASRIAVTKRGSRLGIATLEDR
AGKIDITLFSEALENYGDLLVKDNIIIATGSVQSDDFNGGLKMSVREIANLDEIRSRYAK
SLALAISQQQLTPQFVKALREIIEPYKEGTLPLHFYYQSPEGRALLRGGVEWRVTPKDEM
LDKLAVLLGENAVELEFE
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atgactcaaccacgctttgttcatcttaaagtacacagtgatttttctatgattaatggg
cttgctaaagtaaaagccttagtcaaaactgccgctgccaaacagatggctgcaatggcg
ttgactgattttagtaacttttgtggcttagtgaaattttatggtgaatcattaactgcc
ggcttaaagccaattattggtgctgatatttatgttcgttctgatccaactagtgaagat
atttttgaactgacactattagcaaaaaataatcaaggctatcacaatatcactgttcta
ctttctcgtgcttatcagcaaggttatgttgagtttcctattgtcgaaaaagcgtggcta
gctgaattaaatgagggaatcattgtactttcaggcggacgttcaggtgatgtgggcaaa
gctttacttaaagaaaatgaacaagaagccgccacattagtggctttttatcaacaatat
ttcgcggatcactattatctttctctttgtcgaacagggcgctcagatgaggaacgttac
cttcagcaagcggttcaatttgccaaaaaatatcaattacctttagtcgcagtcaatgac
gtagtcttcttgaaagaagatgattttgatgcacacgaaattcgggttgccattcacgat
agttatacactcgacgatcccaaacgccctcaaaaatactctccgcaacaatattttcgt
tcagaagaagaaatgtgcgccttatttgccgacttaccacaagcgttgatgaatagcatt
caaattgcaatgcgttgtaatgtaacaatacggctaggagaatattttcttcccaacttc
ccaaccggcgaactttctacggaagatttcctgatcaaaaaatcacaagaaggattagaa
gaacgattagcctttttatttccagatgctgaaacacgaaaaaataagcgctcagtttat
gatgaacgtttgcaagttgagcttgatgtaatcaatcaaatgggctttccaggttatttt
ttaatcgtaatggaatttattcaatggtcaaaagataatgatatcccggttggtcctgga
cggggttctggcgcaggttcattagttgcttatgccctcaagattaccgatctagaccca
ttacaatttgatttgctatttgaacgtttcttaaatcccgaacgtatttccatgcccgat
tttgatgtcgatttctgtatggatggacgcgatcacgtgattgaacacgtagcagataca
tacggccgtcaagccgtatcacaaattattacttttggcactatggcggctaaagcagtt
attcgcgatgttggacgagtgcttggccatccatataattttgtcgatagaatttcaaaa
ttgattcccgcagatcctggcatgactttagcaaaagcctttgaggcggaaccgaaattg
ccagaattatataatgccgatgaagaagtaaaagatctaatcgatatggcacgcaagctt
gaaggagtaacgcgtaatgcgggcaaacacgcaggaggtgtcgtgattgcgccgacggca
atcaccgatttttcaccgctttactgcgattcagaaggcttacatccagtcacgcatttt
gataaaaacgatgttgaatatgccggcttagtcaaatttgacttcttaggtctgcgaaca
ttaaccattatcaaatgggcattggagatgattaaccaacggttaacgcgtgagggtaag
ccaccaatacggatcgaaaacattccacttgatgataaaccatcatttaaattgctgtta
gccgccaaaactaccgcagtctttcagctagaatcccgcgggatgaaagatttaatctca
cgccttaagcctgactgttttgaagatattatcgcattagttgccttattccgtcccggc
ccacttgagtcaggaatggtacaaaactttatagatcgtaaacacggtattgaagaagtt
tcttacccagatgcacaatatcaacatgaatgtttaaaacctattcttgagcctacttat
ggtataattgtttatcaagaacaagtcatgcaaattgctcaagaattagccggatataca
ctcggcagtgctgatttattacgccgggcaatgggtaaaaagaaaccggaggaaatggca
gctcaacgtgatatttttgaaaaaggcgccattgaaaaggggattgatggccagttagca
ataaaaatttttgatttagtggaaaaattcgccggttatggttttaataaatcgcactct
gctgcttatgctttggtttcctatcaaacactttggttaaaagcacattatcccgctgaa
tttatggcagccgttatgacttctgagatggataatactgataaaatcgttgggctttat
gatgaatgtatcaatatgggattaaccgtggtgcctcccgatgttaacagtggcaagcat
cgcttttcagtcaatgaaaaagggcaaattgtgtatggtttaggcgcaatcaaaggtgtg
ggtgaaggcccaatcgaagcaattctagaagcacgtaacaaaggcggtatctttaaagat
ttattcgatttaactgcccgtgttgatctgaaaaaaatcaatcgccgtacgtttgagagt
ctgattatgtcaggagcatttgataaattaggcccccatcgtgcagccttaatgaaaaat
ttagaagatgcgcttaaagcgtctgatcaacatagtaaaatggaagcactcggacaaagt
gatatgtttggcgtgttaacagaaacccctgaacaagtccaaaaagcgtatgcaaatacc
cctaaatggtctgaacaagcggtattagaaggcgaacgaacaaccttaggtttatacttg
agtggccacccaatcggccgtttcttaaaagaacttgctcattatgcgccaacaaggcta
aatgaattacaaccgacacggcgtgggcaaatggtcacagtggcgggtattatcgttgca
tctcgcattgcagtaaccaaacgtggcagccgtttaggtattgctacacttgaagatcgt
gctggcaaaattgatattacattattttctgaagccttagaaaattatggcgatttatta
gtaaaagataacattattatcgccactggttcagtacagtctgatgattttaacggtggt
ttgaaaatgtcggtcagagagattgccaatttagatgaaatccgtagccgatatgccaaa
agccttgcacttgctattagccaacaacaacttacaccgcaatttgtgaaagcgttacgt
gaaatcattgaaccctataaagaaggcacactgccattacatttttactatcaaagccct
gaagggcgagcattattacgtggcggggtagaatggcgtgttacgcccaaagatgaaatg
ctagataaattagccgttttactaggtgaaaatgcggtcgaactagaatttgaataa
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