Haemophilus ducreyi: HD_0975
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Entry
HD_0975 CDS
T00135
Symbol
mfd
Name
(GenBank) transcription repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hdu
Haemophilus ducreyi
Pathway
hdu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hdu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HD_0975 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hdu03400
]
HD_0975 (mfd)
Enzymes [BR:
hdu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HD_0975 (mfd)
DNA repair and recombination proteins [BR:
hdu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HD_0975 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
MFD_D3
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
AAA_22
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AAP95856
UniProt:
Q7VMK0
LinkDB
All DBs
Position
complement(768923..772405)
Genome browser
AA seq
1160 aa
AA seq
DB search
MTAYMSLELHFNLPLISPEAAKFQDHQTLGNLIGDADTLIIAQAATQFNGCTLVVTTDIR
TALRLEKSLRQFSQLPVAVFPDWETLPYDNFSPHQEIISARLSALFHLRQTKQQILLLPV
NTLLQKLCPPSYLANNVLLIKKGDRFSIDSLRLQLENAGYRAVEQVLEYGEYAVRGALFD
LYPMGTSLPFRLDFFDDEIDSLRTFDVDTQRTISEIEQINLLPAHEFPTDQQGIEHFRTK
FREVFGEIRREPEHIYQQVSKGILNGGIEYWQPLFFQEMASLFDYLSPNTLFITYAGIND
KATQFYQETTQRYQSRQLDPMRPLLKPEQLWFKPDEINRALKGYPRLTLTTEKIRETTAK
MNASVQPLPALAINTHLKDPLQAFNQFRNTFSGKIIFSVETEGRRETLLELLAPLKIKPK
QINTLAEADSQICLLISPLDQGFIFEDTSGQHYAVICETNLLGKRVQKTVKKDKHNAVNP
DTLIRNLAELKIGQAVVHLENGVGRYAGLTVLDTGGIKAEYLVLNYANDAKLYVPVAALH
LISRYIGGADEQAPLHKLGSETWAKNRQKAVEKIHDIAAELLDIYAKRETQKGFKFAYDR
DAFMQFSHSFPFEETEDQKLAIHAVISDMCQAKAMDRLICGDVGFGKTEVAMRATYLAVE
NHKQVAVLVPTTLLAQQHYEDFKDRFANYPINIEVLSRFKTAKEQKDILARVATHKVDIL
IGTHKLLQDNVKFHDLGLLVIDEEHRFSVRQKEKIKQLRANIDILTLTATPIPRTLNMAL
NGMRDLSIIASPPSRRLTIKTFVCQQDDTIIKEAILREILRGGQVYYLHNDVATIENCAT
KLAELVPEARIVIGHGQMRERDLERVMSDFYHQRFNLLVCSTIIETGIDVPTANTIIIEQ
ANKFGLAQLHQLRGRVGRSHHQAYAYLLTPHPKTLTKDAQQRLEAISSIDNLGAGFVLAT
HDLEIRGAGELLGAEQSGQIESIGFSLYMDLLKNAVQALQNGLEPTLDEITQSQVEIELR
IPALLPDDYVPDVNMRLSFYKRIASTENKEGLKDLKIELIDRFGLLPEAAQNLFRITQLR
HMAKQLDLKKIEMGVNGGYLEFKPNAQLNPIKFLQLIQSDKNMFKFDGPLKFKIIKPFEK
GEQRLQFITDLITELTNQAD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgacggcttatatgtctttagaacttcatttcaatttgcccctaatttcaccagaagcg
gctaaatttcaggatcaccaaacacttggcaatctaataggggatgctgatacattaatt
attgcacaagcagccacacaatttaacggttgcaccttagtggttaccaccgatattcgc
acagcattgcgtcttgaaaaatcattacgccaatttagtcaattaccggttgccgttttt
cctgattgggaaacattgccttacgataatttctctcctcatcaagaaatcatttctgca
cgtttatcagcattattccatttacgacaaactaaacagcaaatattactgttacccgtc
aacacattactacaaaaactctgcccgccaagttacctagcaaataacgtgttattgatc
aaaaaaggggaccgcttttcgattgattcactacgcctacaattagaaaatgcaggttat
cgtgccgttgaacaagtattagaatatggtgaatacgccgtacgtggcgcattatttgat
ctctacccaatgggcacaagcctacctttccgtttggactttttcgatgacgaaattgac
tcattaagaacatttgatgttgatacacaacgcaccattagcgaaattgaacaaatcaat
ttattacccgcccacgagtttcctactgatcaacaaggtattgaacattttcgcacgaaa
ttccgtgaagtctttggcgaaatcagacgcgaacctgaacatatttatcaacaagtcagc
aaaggtattttgaatggcggtattgaatattggcaaccgcttttctttcaagaaatggct
agtctattcgattatcttagtcccaacaccttatttattacctatgcaggcattaatgac
aaagcgacacaattttatcaagaaacaacacaacgctaccaaagtcgtcaacttgatcca
atgcgcccactcctcaaacctgaacaactatggtttaaacccgatgaaatcaatcgcgca
ttaaaaggctatccacgcttaacattaacgacagaaaagatccgcgaaactacggctaaa
atgaatgcaagtgttcagccattacccgcattagccatcaacacacacttaaaagatcct
ttgcaggcttttaaccaatttcgcaacacatttagcggtaaaattatcttttctgtggaa
acagaaggtcggcgtgagaccttacttgaattacttgcaccattaaagattaagcctaaa
caaatcaataccttagctgaagctgattcacaaatttgcctattaatttcaccgcttgat
caaggttttatttttgaagatacaagcggacaacattacgccgttatttgcgaaacaaat
ctattaggtaagcgtgttcaaaaaacagtcaaaaaagacaaacacaacgcagtcaatcct
gataccttaatccgtaacttagctgaactcaaaatcggacaagcagtagtgcatttagaa
aatggagttggacgttatgcaggcttaactgtgttagatactggtggcatcaaagcggaa
tatttagttttgaattatgctaatgatgcaaaactttacgtgccagtcgccgcattacat
ttaatctcacgttatatcggcggagctgatgaacaagcacctttacataaattaggatct
gaaacctgggcaaaaaatcggcaaaaagcggtcgaaaaaattcatgatattgccgcagaa
ttattagatatttatgctaaacgagaaacacaaaaaggctttaaatttgcctatgatcgt
gatgctttcatgcaatttagccattcctttccatttgaagaaactgaagatcagaaactt
gccattcatgctgtgatcagcgatatgtgccaagcgaaagcaatggaccgattaatttgc
ggtgatgtaggcttcggcaaaacagaagttgcaatgcgagcaacctatcttgcggtagaa
aatcataaacaagtcgcagtattagtgcccacaaccttgctagcacaacaacattatgaa
gattttaaagatcgcttcgccaactacccaattaatattgaagtattatcccgctttaaa
accgccaaagaacaaaaagatattctagcgcgtgtagccactcacaaagtcgatatccta
ataggaacacataaactattacaagataatgtaaaattccacgatcttggcttattagtg
attgatgaagaacaccgctttagcgtccgtcaaaaagaaaaaatcaaacaattaagagca
aatattgacattctgacgctaactgcgacccctattccaagaacattaaatatggcgcta
aatggtatgcgtgatttatctatcatcgccagcccaccatctcgccgtttaacgatcaaa
acctttgtttgccaacaagacgacaccatcatcaaagaagccatcttgcgtgaaatttta
cgtggcggacaagtttactacttacataatgacgtagcgactatcgaaaattgtgccact
aaattagctgaattagtacctgaagcgcggattgttatcggacacggacaaatgcgagaa
cgcgatttagaacgagtaatgagcgatttttatcatcaacgctttaacctattggtttgc
tctaccattatcgaaacaggcattgatgtaccaacagctaatacaattattattgaacaa
gcgaataaatttggcttagcacaacttcatcaattacgtggccgtgtaggacgttcgcac
catcaagcctatgcttatttattaacaccacatcctaaaaccttaaccaaagatgctcaa
caacgtttagaagcaattagttcaattgataaccttggtgccggctttgtcttagccaca
cacgacttagaaatacgcggtgctggcgaattacttggtgccgaacaaagcggacagatt
gagtctattggtttctcactatatatggatttactcaaaaatgccgtacaagcattacaa
aacggccttgaacccacccttgatgaaatcacacaaagccaagtagaaattgagctccga
attccagcattattgcctgatgattatgtccccgatgtcaatatgcggttgtccttctac
aaacgaattgcaagcacagaaaataaagaaggattaaaagatctcaaaattgagctaatc
gatcgctttggtttactgcctgaagccgcccaaaatttatttcggatcacacagttacgc
catatggcaaaacaacttgatctgaaaaaaattgaaatgggtgttaatggtggctattta
gaattcaaaccaaatgcacaactaaacccaatcaaatttttacaactgattcaatcagac
aaaaatatgtttaaatttgatggaccattaaaatttaaaattatcaaaccttttgaaaag
ggtgaacaacggttacaattcatcactgatctaattacagaattaactaaccaagcggac
taa
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