Haemophilus ducreyi: HD_1412
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Entry
HD_1412 CDS
T00135
Symbol
sbcB
Name
(GenBank) exonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
hdu
Haemophilus ducreyi
Pathway
hdu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hdu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
HD_1412 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hdu03400
]
HD_1412 (sbcB)
Enzymes [BR:
hdu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
HD_1412 (sbcB)
DNA repair and recombination proteins [BR:
hdu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
HD_1412 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
HD_1412 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HD_1412 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
AAP96219
UniProt:
Q7VLL6
LinkDB
All DBs
Position
1156909..1158450
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AA seq
513 aa
AA seq
DB search
MNNDFTFFFYDYESFGINPATDRPAQFAGIRTDREFNIIGEPVMFYCKQTNDYLPSAEAV
MVTGIAPQLCNEKGLSEPEFAQRIHHEFSQPNTCIIGYNNIRYDDEMTRYTFFRNFYDPY
EYCWKNGNSRWDLLDLVRACYALRPSGIEWPKNEKDEPSFKLEHLTKANAIAHQNAHDAM
ADVYATIEIAKLIKQKQRKLFDFFFENRSKKALEKLIDPAELTPLVHVSGMLGNYRGNTA
LIVPLAWHPTNQNAVVVCDLSSDIQGLLNDTAEVLKQRLYTKRDALAEHESPVPLKLVHL
NKCPILAPAKTLLAENAMRLAIDRSQCLLNLAKLQAQKAVVREKVIEIFNDERIFAPSNN
VETTLYDSFFSNGDKNNLAILRTLKPEQLAEHGLKFADKRVEPLLFHYRARHFPNTLTRA
EQIKWQKYCHQQIDAKTEQFSQEIANLFERYADHADKVKLLEDLTAYATQLSQYTLPLPS
AAQKNQLMAELNKVAEQQIDKAIKLDLLKTLIK
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacgattttacttttttcttttatgattatgaaagtttcggcataaatccagca
actgatcgacctgcgcaatttgcgggtattcgtacggatagagaatttaatattattggt
gaaccggtaatgttttattgtaaacaaactaatgattatttgccttcagctgaagcggtg
atggtaacaggcattgcaccacaactctgtaatgaaaaaggcttgtcagaaccagaattt
gctcaacgtattcatcacgaatttagtcaacctaatacttgcattattggttataacaat
atccgttatgatgatgaaatgactcgttatacgttttttcgtaatttttatgatccttat
gaatattgttggaagaacggcaattcccgttgggatttacttgatttagtgcgcgcgtgc
tatgcattacgtccgtccggcattgaatggcctaaaaatgaaaaagatgaaccttctttc
aagttagagcatttgacgaaagcaaatgctattgcacatcagaatgcgcacgacgcgatg
gcagatgtatatgccacgattgaaatagcaaaattaattaagcaaaaacagcgcaaatta
tttgacttcttttttgaaaacagaagtaaaaaagcgcttgaaaaattaattgatccggcc
gagttaacgccattagtgcatgtctcaggtatgttaggtaactatcgcggtaatactgcg
ttgattgtacctcttgcttggcatcccacgaatcagaatgctgtggttgtctgtgactta
tcaagtgatatacaagggctattaaatgatactgcggaggtgttaaaacaacgtttatat
actaaacgtgatgctttagctgaacacgaatctccagtgccgttgaagttagttcatcta
aacaaatgcccaattttagcgccagctaaaaccttattagcagaaaatgcaatgcgtttg
gcgattgatcgttcacaatgcttgctaaatttagccaagttacaagcacaaaaagcagtc
gttcgagagaaagtgattgaaatattcaacgatgagcgtatttttgcgccttcaaacaac
gtagaaacgacgttatacgacagttttttttcaaatggggataaaaacaacttagctatt
ttacgtacattaaaaccagaacaactcgctgagcatggtttaaaatttgcagataaacgt
gtagaaccgttgttattccactatcgagcaaggcatttcccaaatacattaacgcgggca
gagcagattaaatggcagaaatattgccatcaacaaattgatgcaaaaacggagcaattt
agtcaggaaattgcaaacttatttgagcgttatgctgatcacgcagacaaagtaaaatta
ttagaagatctgaccgcttatgcgacacagctttcacaatatacattgcctttaccaagc
gctgctcaaaagaaccaattaatggcagaactgaataaagtggcagagcaacagattgat
aaggcaataaaacttgacttgttgaaaacattaattaaataa
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