Haemophilus ducreyi: HD_1590
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Entry
HD_1590 CDS
T00135
Symbol
deaD
Name
(GenBank) cold-shock DEAD box protein-A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
hdu
Haemophilus ducreyi
Pathway
hdu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hdu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HD_1590 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hdu03019
]
HD_1590 (deaD)
03009 Ribosome biogenesis [BR:
hdu03009
]
HD_1590 (deaD)
Enzymes [BR:
hdu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HD_1590 (deaD)
Messenger RNA biogenesis [BR:
hdu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HD_1590 (deaD)
Ribosome biogenesis [BR:
hdu03009
]
Prokaryotic type
rRNA helicases
HD_1590 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
DRTGG
Amnionless
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AAP96370
UniProt:
Q7VL89
LinkDB
All DBs
Position
1311864..1313684
Genome browser
AA seq
606 aa
AA seq
DB search
MTNNTLTFSDLGLPQSILDAVNDMSFVTPSPIQQECIPHLLAGSDVLGMAQTGSGKTAAF
SLPLLAQIDPNQRHPQMLVMAPTRELAIQVADACEQFTKNMKGIRVVTVYGGQRYDIQLR
ALKQGSQVVVGTPGRILDHIRRGTLNLSTLKSIVLDEADEMLRMGFIDDVETVMAELPEK
HQTALFSATMPEPIRRITRRFMSDPKEVKIQATQRSAPDITQSYWLVNGFRKNEALLRFL
EVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDMTQQAREQTLDKLKSGRLDILV
ATDVAARGLDVERISLVVNYDIPLDSESYVHRIGRTGRAGRSGRALLFVEPRERRLLRNI
EQLMKKPIDPVAIPNHQVLMEKRREKFKAKISKQLEHHDLEKYRELLENLFTADQDHEEL
AAAMMMLQEKQKLILPPDPEVRNLRSERGRRDRNERNDRRNGREHRENNGVAMDLYRIEL
GREDGVEVRHIVGAIANEGDINSRYIGHIKLHDRYSTIELPKGIPNHIVQHFAHKARVLN
KQMQMSLLGPAGGANNQPFEERRGSRRDQRNSGRNSRPNYREDSFNKERKNTGFKEKRFN
NKSSRD
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgacaaataatactttaactttctctgacttaggtcttcctcaatcaattctcgatgct
gtcaatgatatgagttttgtaactccatctcctattcaacaagaatgtattccccattta
ttagctggtagcgatgtactcggtatggcgcaaactggtagcggtaaaacagcggcattt
tcattgcctttactcgcacaaatcgatccgaatcaacgccatccacaaatgttggtgatg
gcaccgactcgtgaattagcgattcaagttgcggatgcttgtgagcaatttaccaaaaat
atgaaaggtattcgtgtagttaccgtttatggtggtcaacgttacgatattcagttacgt
gcattaaaacaaggttctcaagtggttgtgggtacacccggtcgtattcttgatcatatt
cgccgtggtacgttaaatttatctaccctcaaatcaatcgtgttagatgaagccgatgaa
atgttacgtatgggctttattgatgatgttgaaacagtaatggcagaattaccagaaaaa
caccaaacagccttgttttcagccaccatgccagagcctatacgccgtattacacgccga
tttatgtctgatcctaaagaagttaaaattcaagcaacacaacgttctgcaccagatatt
acacaaagctactggttggtaaatggtttccgcaaaaatgaagccttactgcgcttttta
gaagttgaagaatttgatgcggctattattttcactcggactaaaacaggcacgattgat
atcaccgaattatgtgagcgtaatggctatcgcaccgcagcgctcaacggtgatatgact
caacaagctcgtgagcaaactttagataaattaaaatcaggtcgtttagatattcttgtg
gcaacagatgttgcagcacgtggcttagatgtggaacgaattagcttagtggttaactac
gatattccattagactctgaaagttatgtacatcgaatcggtcgtactgggcgtgctggc
cgttcagggcgtgcattattatttgtcgaaccaagagaacgtcgcttattacgcaacatc
gaacaattaatgaaaaaaccaattgatccggtggctattccaaatcatcaagtattaatg
gaaaaacgccgtgagaaatttaaagctaagatttctaaacagttagaacatcatgattta
gaaaaatatcgtgaattgcttgaaaacttattcacggccgatcaagatcacgaagaactt
gcagcggctatgatgatgcttcaagaaaaacagaaattaatattaccgcctgatccagaa
gtacgtaatttacgcagtgaacgtggtcgccgtgatcgtaacgaacgtaacgatcgccgt
aatggtcgcgaacatcgtgaaaataatggtgtagctatggacttataccgtatcgaatta
ggccgtgaagatggtgtggaagttcgccatattgttggcgcaatcgcaaatgaaggtgat
attaatagccgttatattggtcatattaaattgcatgatcgctattcaactattgaatta
cccaaaggtataccaaaccatatcgtacaacactttgcacataaggcgcgcgtattaaac
aaacaaatgcaaatgtcattattaggccctgccggtggtgctaataatcaaccatttgaa
gaacgccgtggaagtcgtcgtgatcaacgcaatagcggtcgtaatagtcgtccaaattac
cgcgaagatagctttaataaagagcgtaaaaatactggctttaaagaaaaacgctttaat
aacaaaagtagccgtgattaa
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