Haemophilus ducreyi: HD_2016
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Entry
HD_2016 CDS
T00135
Symbol
dacA
Name
(GenBank) penicillin-binding protein 5
KO
K07258
serine-type D-Ala-D-Ala carboxypeptidase (penicillin-binding protein 5/6) [EC:
3.4.16.4
]
Organism
hdu
Haemophilus ducreyi
Pathway
hdu00550
Peptidoglycan biosynthesis
hdu01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
hdu00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
HD_2016 (dacA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
hdu01002
]
HD_2016 (dacA)
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
hdu01011
]
HD_2016 (dacA)
Enzymes [BR:
hdu01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
HD_2016 (dacA)
Peptidases and inhibitors [BR:
hdu01002
]
Serine peptidases
Family S11: D-Ala-D-Ala carboxypeptidase A family
HD_2016 (dacA)
Peptidoglycan biosynthesis and degradation proteins [BR:
hdu01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
HD_2016 (dacA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S11
PBP5_C
Beta-lactamase2
DUF5839
Motif
Other DBs
NCBI-ProteinID:
AAP96725
UniProt:
Q7VKA7
LinkDB
All DBs
Position
complement(1677958..1679139)
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AA seq
393 aa
AA seq
DB search
MKKRLFTSISLVALAFSHSAVAVDASVEFGISAPQLNAQTYVLMDYNSGAVLASLNPQQR
QHPASLTKMMTSYVVGDAIKQGKVKNSDMVTVSENAWARKFPGSSLMFLDLNTQVSVADL
MRGLIIVSGNDAAVALAEHTSGSQQAFIDQMNKFGQQFGLKNTHFTTVHGLDEESQYSSA
LDMAIIGAHVIRDQPEEYKIYSEKEFKYNIKKPQPNRNGLLWDKTMNVDGMKTGHTNQAG
YNLVASATNSNTRLISVVMGVPTYKGREVESKKLLQWGFANFETVKSLPAGQTVSEQGVY
YGESNKVQLGTLTDSFVTIPKGKTTDLKVRHELTPKHLEAPLTKGQVVGKVIYQLDSKDI
AVHDLQVLQEVKETGLLGKIWDWLALTVKSLFD
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaaagattatttacatcaatcagccttgttgcattagctttttcccactcagca
gtagcagtagatgcaagtgttgaatttggtatttcagcaccacaattaaatgcgcaaact
tatgtgttaatggactataactctggtgcggtattagcaagtttaaatcctcaacaacgt
caacatcctgcatcattaactaaaatgatgacgagttatgttgtcggtgatgcgattaaa
caaggtaaagtaaaaaacagtgatatggtcacagtaagtgaaaatgcttgggctcgaaaa
tttccgggttcatcattaatgtttttagacttaaatacccaagtgtctgtagccgattta
atgcgaggcttaattattgtttcaggtaatgacgctgcggttgcattagcggaacatact
tcaggttcgcaacaagcgtttattgatcaaatgaataaatttggtcaacagtttggtttg
aaaaatacgcattttacaacggtacatggtctagatgaagagagtcaatattcatccgct
ttagatatggctattattggtgctcatgttattcgtgatcagccagaagaatataaaatc
tactctgaaaaagaatttaaatataatattaaaaaaccgcaaccgaatcgtaatggctta
ttatgggataaaacgatgaatgtggacggtatgaaaaccggtcacactaatcaagcgggc
tataatttagttgcatcagctactaatagtaatacgcgtttgatttctgtcgtgatgggc
gtgccaacttataaaggtcgtgaagttgaaagtaaaaagttattacaatggggctttgct
aatttcgagacggttaaatcattgcctgcgggtcaaactgtttcagaacaaggcgtttac
tatggtgaaagtaataaagttcaacttggtacgttaacggatagttttgtcacgattcct
aaaggcaaaacaacagatttgaaagttcgccatgagttaacacctaaacatttagaagcg
ccattaactaaaggtcaagttgtggggaaagtgatttatcaattagacagtaaagatatt
gcggtgcacgatttgcaagtattacaagaagtgaaagaaacggggcttttaggcaaaata
tgggattggttagcattaaccgtaaaaagtttatttgactag
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