Herbiconiux sp. SALV-R1: HL652_01100
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Entry
HL652_01100 CDS
T06594
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hea
Herbiconiux sp. SALV-R1
Pathway
hea03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hea00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HL652_01100 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hea03021
]
HL652_01100 (rpoC)
03400 DNA repair and recombination proteins [BR:
hea03400
]
HL652_01100 (rpoC)
Enzymes [BR:
hea01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HL652_01100 (rpoC)
Transcription machinery [BR:
hea03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HL652_01100 (rpoC)
DNA repair and recombination proteins [BR:
hea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HL652_01100 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF1690
Motif
Other DBs
NCBI-ProteinID:
QJU52384
UniProt:
A0A6M5IUV4
LinkDB
All DBs
Position
212638..216516
Genome browser
AA seq
1292 aa
AA seq
DB search
MLDVTTFDELRIGLATADDIRKWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPSRDWEC
SCGKYKRVRFKGIVCERCGVEVTKSSVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDM
APKDLEKVIYFAAYMIISVDEDGRHEDMPGLENELRLEIKTLADQRDARIADRLGRLEAD
LAELEAEGAKADQKRRTKDGAEKEMSQTRKAYDEQISQLERVWEDFRNLKVGELKPEDAI
FHELQDRYGMYFEAYMGAEAIKKRLEAFDLEAESETLHLQIAEGKGQKKIRAIKRLRVVN
SFLQTGNSPAAMVLDVVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLRRLLDL
GAPEIIVNNEKRMLQEAVDALFDNGRRGRPVTGTGNRALKSLSDMLKGKQGRFRQNLLGK
RVDYSGRSVIIVGPQLKLHQCGLPKQMALELFKPFVIKRLIDLSHAQNIKAAKRMVERSR
PQVWDVLEEIIRERPVLLNRAPTLHRLGIQAFEPQLVEGKAIQLHPLVCAAFNADFDGDQ
MAVHLPLSVEAQAEARILMLASNNILKPSDGRPVTLPTQDMIIGLHHLTTVKEGATGEGR
AFSTVSEAILAKDQGTLDLNAWVKIRMSDVHFAEGDAPEGYEGGPVLVETTLGRALFNEA
LPEDYPFVQQVADKGTISAIVNDLAERYPKVEVAASLDRIKDAGFYWATRSGVTVALSDI
LTPPTKREIVAGYEKQAAKVQAQFEKGLTTDLERRQELIQIWTKATDEVAAAMRANFPVD
NTINRMVTSGARGNWLQVRNIAGMRGLVNNPKGEIIPRPIISSYREGLSVAEYFIATHGA
RKGLADTALRTADSGYLTRRLVDVSQDVIIRETDCGTSRGLDLPIALEGADGVWTRDDNV
ENSVYARSLAADAVNEQGEVVAEAGDDVGDVLIDKLVAAGVRTIKVRSVLTCESAVGVCA
TCYGRSLATGNLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGSASADDITQGLPRVQEL
FEARTPKGASPIVEAAGRVVIEDTDRSRKVILTPDNGDEPIAYPVLKRATLLVEDGQHVE
LGQQLIVGAVDPKEVLRVKGVREVQKHLVGGVQGVYRSQGVPIHDKHIEVIVRQMLRKVT
VVEHGDTDLLPGELVDRSRYTEVNRAALSEGKRPASARQEVMGITKASLATESWLSAASF
QETTRVLTQAAMEGKSDPLVGLKENVIIGKLIPAGTGLQKYRNVTVEATEEAKAERYPNR
IFTDDSVFSEADLSFVDFDSFSSDDYTPGTYN
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgtaacaacttttgatgagctgcggatcggtctcgcgacggcagacgacatc
cgcaagtggtcgcacggtgaggtcaagaagcccgagaccatcaactaccgcacgctgaag
cccgagaaggacggcctcttcggagagcagatcttcgggccgagccgtgactgggagtgt
tcctgcggcaagtacaagcgcgtgcgcttcaagggcatcgtctgcgagcgctgcggtgtc
gaggtcacgaagtcgtcggtgcgccgtgagcgcatgggccacatcgagctcgccgctccg
gtcacgcacatctggtacttcaagggtgtgccgagccgcctcggctacctgctcgacatg
gcgccgaaagacctcgagaaggtcatctacttcgccgcgtacatgatcatctcggtcgac
gaagacggccgtcacgaagacatgcccggccttgagaacgagctgcggctcgagatcaag
accctggcagaccagcgtgacgcccgcatcgccgaccgcctgggccggctcgaggccgac
ctggccgagctcgaggccgagggtgccaaggccgaccagaagcgccgcacgaaggatggc
gccgagaaggagatgtcgcagacccgcaaggcctacgacgagcagatctcccagctcgag
cgcgtctgggaggacttccgcaacctcaaggtgggtgagctgaagcccgaagacgccatc
ttccacgagctgcaggaccgctacggcatgtacttcgaggcctacatgggcgcggaggcc
atcaagaagcgtctcgaggcgttcgacctcgaggccgagtcggagaccctgcacctgcag
atcgccgagggcaagggtcagaagaagatccgcgccatcaagcgtctgcgcgtggtgaac
tccttcctgcagaccggcaactcgccggccgcgatggtgctcgacgtcgttccggtcatc
ccgccggagctgcgcccgatggtgcagctcgacggtggccgcttcgcgaccagtgacctc
aacgacctctaccgtcgtgtgatcaaccgcaacaaccgtctccgtcgactgctcgacctc
ggtgctcccgagatcatcgtcaacaacgagaagcggatgctgcaggaagccgtcgacgcc
ctgttcgacaacggccgccgtggtcgccccgtcacgggtaccggcaaccgcgccctgaag
tccctgagcgacatgctcaagggaaagcagggtcgcttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcatcgtcggtccgcagctgaagctgcaccag
tgcggtctgcccaagcagatggcgctggagctgttcaagccgttcgtcatcaagcgcctg
atcgacctgagccacgctcagaacatcaaggccgcgaagcgcatggtggagcgcagccgt
ccgcaggtgtgggacgtgctcgaggagatcatccgcgagcgccccgtgctgctgaaccgt
gcaccgacgctccaccgtctcggcatccaggccttcgagcctcagctcgtggagggcaag
gcgatccagctgcacccgctcgtctgcgcggcgttcaacgccgacttcgacggtgaccag
atggccgtgcacctcccgctgtcggtggaggcccaggccgaggcgcgcatcctgatgctc
gcgtcgaacaacatcctgaagccgtccgacggccgcccggtgaccctgccgacgcaggac
atgatcatcggtctgcaccacctcaccacggtgaaggagggtgcgaccggcgagggccgt
gcgttctcgacggtgtcggaggccatcctggcgaaggaccagggcaccctcgacctgaac
gcctgggtcaagatccgcatgtccgacgtgcacttcgccgagggcgacgcccccgagggc
tacgagggcggtcccgtcctggtggagaccaccctcggtcgcgcgctcttcaacgaggcg
ctcccggaggactaccccttcgtgcagcaggtggccgacaagggcaccatctcggcgatc
gtcaacgacctcgccgagcgctacccgaaggtggaggtcgccgcctcgctcgaccgcatc
aaggacgccggcttctactgggccacccgctcgggtgtcaccgtggcgctcagcgacatc
ctcacgcctcccacgaagcgcgagatcgtcgccggctacgagaagcaggccgccaaggtg
caggcgcagttcgagaagggtctgacgaccgacctcgagcgtcgccaggagctcatccag
atctggacgaaggccaccgacgaggtcgccgcagccatgcgcgcgaacttcccggtcgac
aacacgatcaaccgcatggtcacctcgggtgcacgtggtaactggctgcaggtgcgcaac
atcgccggtatgcgaggcctcgtgaacaacccgaagggtgagatcatcccccgtccgatc
atctcctcgtaccgcgagggattgtcggtggcggagtacttcatcgcgacccacggtgct
cgtaagggcctcgccgacacggctctccgtacggccgactccggttacctcacgcgtcgt
ctcgtcgacgtctcgcaggatgtcatcatccgcgagaccgactgcggcacctcgcgtggt
ctcgacctgccgatcgccctcgagggcgccgacggcgtctggacccgcgacgacaacgtc
gagaactcggtgtacgcccggtcgctggctgcggatgcggtcaacgagcagggcgaggtc
gtcgccgaagccggtgacgacgtgggcgacgtgctgatcgacaagctggtggccgcgggt
gtccgcaccatcaaggtgcgctccgtgctcacctgcgagtcggctgtcggcgtctgcgcg
acctgctacggccggtcgctggccaccggaaacctcgtggacatcggagaggccgtcggc
atcatcgcggcccagtcgatcggagagcccggaacccagctcacgatgcgcaccttccac
acgggtggctcggcctcggccgacgacatcacgcagggtcttccccgcgtgcaggagctc
ttcgaggcccgtaccccgaagggtgcgtcgcccatcgtcgaggccgccggtcgcgtcgtg
atcgaagacaccgaccgcagccgcaaggtgatcctcacgcccgacaacggcgacgagccg
atcgcctacccggtgctgaagcgtgcgaccctcctcgtcgaggacgggcagcacgtcgag
ctcggtcagcagctcatcgtcggcgccgtcgacccgaaggaggtcctccgggtcaagggc
gtgcgcgaggtgcagaagcacctcgtgggcggtgtgcagggcgtctaccgttcgcagggt
gtgccgatccacgacaagcacatcgaggtcatcgtgcgccagatgctgcgcaaggtcacc
gtcgtcgagcacggcgacaccgacctgctgcccggtgagctcgtcgaccggtcgcgctac
accgaggtcaaccgcgccgccctctccgagggcaagcggcccgcctcggcccgtcaggag
gtcatgggtatcaccaaggcgtccctcgcgaccgagtcgtggctgtcggccgcgtcgttc
caggagaccacgcgtgttctcacgcaggccgccatggagggcaagtccgacccgctggtg
ggcctgaaggagaacgtgatcatcggaaagctgatcccggccggtaccggtctccagaag
taccgcaacgtcaccgtcgaggcgaccgaagaggccaaggccgagcgctacccgaaccgc
atcttcacagatgactcggtgttctcggaggccgacctctcgttcgtcgacttcgacagc
ttctcgagcgacgactacaccccgggcacctacaactag
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