Herbiconiux sp. SALV-R1: HL652_02305
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Entry
HL652_02305 CDS
T06594
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
hea
Herbiconiux sp. SALV-R1
Brite
KEGG Orthology (KO) [BR:
hea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hea03016
]
HL652_02305
Enzymes [BR:
hea01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
HL652_02305
Transfer RNA biogenesis [BR:
hea03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
HL652_02305
Prokaryotic type
tRNA splicing ligases
HL652_02305
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QJU55876
LinkDB
All DBs
Position
454431..455606
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AA seq
391 aa
AA seq
DB search
MKEISTRLLSWASILDAKAEAQARTTSTMPFVFPHVALMPDAHLGLGATVGSVIPTLGAV
MPAAVGVDIGCGMIAVRTKFRLDDASGEGRELRVLREQIERAIPVSAGAHNNRIVATAQP
RVAELEALAEEAGFDPAQALGRWREQLGTLGSGNHFIEVSVDESDRLWLFLHSGSRGVGN
RIAQRHIKVAQKAMAKWWIELPDPDLAYLVEGTPEFDRYIAELRWAQHYALLNREEMMDR
VARQFGDWMGASVIEEERINCHHNFTQKETHWGKSVWLSRKGAISARAGELGLIPGSMGT
ASYVVEGLGNAAALHSSPHGAGREYSRSAARKTFTHEQLREAMAGIEYRDTDAFLDEIPA
AYKPIDQIMADAADLVTIRHRLRQLVNVKGD
NT seq
1176 nt
NT seq
+upstream
nt +downstream
nt
atgaaagagatctccacgcgcctgctcagctgggccagcatcctcgatgcgaaggccgaa
gcgcaggcgcgcactacctcgacgatgccgttcgtgttcccgcacgtcgcgctgatgccc
gacgcccacctcgggctcggggcgaccgtcgggtcggtcatccccaccctcggggccgtg
atgcccgcggcggtgggcgtcgacatcggatgcggcatgatcgccgtgcgcaccaagttc
cgcctcgacgacgccagcggcgaggggcgggagctgcgggtgctgcgtgagcagatcgag
cgggccatccccgtctcggccggcgcgcacaacaaccgcatcgtcgccaccgcccagccg
cgagtcgcggagctcgaggcgctcgccgaggaggcgggcttcgaccccgcccaggcgctc
ggccggtggcgcgagcagctcggcacgctcggcagcggcaaccacttcatcgaggtgagc
gtcgacgagtcggatcggctgtggctgttcctgcactccggtagccgcggcgtcggcaac
cgcatcgcgcagcgccacatcaaggtcgcccagaaggcgatggcgaaatggtggatcgag
ctgcccgaccccgacctcgcctacctcgtcgagggcacgcccgagttcgaccggtacatc
gccgaactgcggtgggcgcagcactacgcgctgctcaaccgcgaggagatgatggaccgc
gttgcccgccagttcggtgactggatgggcgcatccgtcatcgaggaggagcgcatcaac
tgccaccacaacttcacccagaaggaaacccactggggcaagagcgtgtggctgtcgagg
aagggtgcgatctcggcgcgggccggtgagctcgggctcattcccggatcgatgggtacg
gcgtcgtacgtggtggaggggctcggcaacgcggcggcgctgcactcctcgccgcacggc
gcggggcgtgagtactcgaggagcgccgcccgcaagacgttcactcacgaacagttgcgg
gaggcgatggcgggcatcgagtaccgcgacaccgacgcgttcctcgatgagatcccggcg
gcgtacaagccgatcgaccagatcatggccgacgccgccgacctcgtcaccatccgccac
cgcctccgccagctcgtcaacgtgaagggcgactga
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