Herbiconiux sp. SALV-R1: HL652_03655
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Entry
HL652_03655 CDS
T06594
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
hea
Herbiconiux sp. SALV-R1
Brite
KEGG Orthology (KO) [BR:
hea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hea03019
]
HL652_03655 (hrpA)
Enzymes [BR:
hea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
HL652_03655 (hrpA)
Messenger RNA biogenesis [BR:
hea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
HL652_03655 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
AAA_19
T2SSE
nSTAND3
SLFN-g3_helicase
NACHT
AAA_30
ResIII
PhoH
TsaE
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QJU52822
UniProt:
A0A6M5IQL3
LinkDB
All DBs
Position
complement(741794..745837)
Genome browser
AA seq
1347 aa
AA seq
DB search
MSADSPLRIVFPPELPVSQKKDEIARAIRDHQVVIVAGETGSGKTTQLPKICLELGRESI
GHTQPRRLAARTIAERIAEELGQEVGGLVGYQVRFTDRASKATRIKLMTDGILLNEMNHD
RMLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKVIITSATIDPESFARHFADAQ
GTSAPIVEVSGRTFPVEIRYRPLAPEAPTDDPDDPDETDERRDRSARPARAPVAPGASAP
EPKDLLEAIGDALDELAREAPGDVLVFLSGETEIRDAEEALRGRLASSGRIADTEVLPLY
GRLSAADQHKVFQRSSTPGIRRRVILSTNVAETSLTVPGIKYVIDAGTARISRYSVRSKV
QRLPIEAISQASANQRSGRSGRTSDGIAIRLYSQEDFERRPEFTDPEILRTNLAAVILQM
ISLDLGDIASFPFLQPPDSRGIKDGLDLLAELGATASNRATVSNAPQLTRIGRDLARLPI
EPRFARMVVESKRTNTSREVLAIVAGLTIQDPRERPLEKRGRADELHARFADPTSDFLTL
LNLWNYLDEKQRELSSSAFRRLCKAEFLNYLRIREWQDVYRQLRQLAKPLGLTLGEPSVN
PDGIHRSLLSGLLSQIGLRDQAKRDYLGARQTRFMIFPGSTLAKKQPSAVMSAELVETSR
LFARMNAAIDPAWAESLAGDLVKRSYSEPHWEKKQGAAVAYERVTLFGVPIVARRRIQFA
RVDPEYARELFIRHALVEGEWESQQAFDRANRAFRRELEQLEERSRRRDILLDDEAVFEF
YQARIPRDVLSQRTFEGWWKKARHDDPDLLTMTLETLLPEGAPEVDETEFPAMWQQGDQR
LALSYRFEPGADDDGVTATVPLALLPRLEERAFESQVPGFRRELVVALIRVLPKRLRVNF
VPATDWAGRLLDEIPDAQGTSGADAPAFLDALAKTMTRLAHVQVTAADFERDRLPEHLRV
TFRVVDERGRTVGAGKDLAALQSKLADAARASIARASGAVGGGSGAGLDPASRVASAGAR
RGAPAGPAGAGGGARAGAAGGPSGPGGPSSGTAGTPSPRFAERTGLTTWDVGDLPRHVDT
AQHGGVIRAYPALVDQKTSVSLRLLATADEQQRTTPAGVLRLLQLAVPSPASYVRDHLTQ
NEKLLLATSPYQNVNALFDDAMLACAEEALRALHPDGLVWSAAEFEAVRDRLSKAVLPLL
DQTITTVVRILSGVRDVERAIKSVTSMALLPAVTDAREQLAALVFPGFVARTGLARLGHL
PRYLAGIVYRLEKLSDNPARDRAWMNEVQTATARYTDAGGSIPLAPHSPENLVRARWLLE
ELRIGLFAQPLGTAEPASLQRITKLLA
NT seq
4044 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccgactcccccctccgcatcgtctttcctcccgagctgccggtcagccagaag
aaggacgagatcgcacgcgccatccgcgaccatcaggtcgtgatcgtcgccggcgagacc
ggatcgggcaagacgacgcagctgccgaagatctgcctcgagctcggccgcgagtcgatc
gggcacacccagccgcgccgtctcgccgcgcgcaccatcgccgagcgcatcgccgaggag
ctcggccaagaggtgggcggcctcgtcggctaccaggtgcgcttcaccgaccgcgcgtcg
aaggcgacgcgcatcaagctgatgaccgacggcatcctgctcaacgagatgaaccacgac
cggatgctgtcgcgctacgacaccatcatcatcgacgaggcgcacgagcgcagcctcaac
atcgacttcctcctcggctacctcaagcagctgctcccccgtcgccccgacctcaaggtc
atcatcacgagcgcgacgatcgaccccgagagcttcgcccgtcacttcgcggatgcgcag
ggcacgtcagcacccatcgtcgaggtctcggggcgcaccttcccggtcgagatcaggtac
cgcccgctcgcgcccgaggcgccgaccgacgacccggacgatcccgacgagacggatgaa
cgccgcgaccggtcggcccgtcccgcccgcgcgcccgtcgcccccggcgcctccgctccc
gaaccgaaagacctgctcgaggcgatcggcgacgccctcgacgagctcgcccgcgaggcc
ccgggcgatgtgctcgtgttcctctcgggggagaccgagattcgggatgcggaggaggcc
ctccgaggtcgtctcgcctcgagcggccgcatcgccgacaccgaggtgctccctctctac
gggcggctgagtgccgccgaccagcacaaggtgtttcagcgcagctcgacgccgggcatc
cgtcgccgggtgatcctctcgaccaacgtcgccgagacgagcctcacggtgccgggcatc
aagtacgtgatcgacgccggcaccgcgcgcatcagccgctactcggtgcgatcgaaggtg
cagcgcctgccgatcgaggcgatctcgcaggcgagcgcgaaccagcgttcgggccgttcg
ggccgcaccagcgacggcatcgccatccgtctctactcgcaggaggacttcgagcggcgg
ccggagttcaccgaccccgagatcctccgcacgaacctcgccgcggtcatcctgcagatg
atctcgctcgacctcggcgacatcgcctcgttccccttcctccaaccgcctgattcacgg
ggcatcaaggatgggctcgatctcttggcggagctcggcgcgacggcctcgaaccgcgcg
acggtctcgaacgctccccaactcacccgcatcggccgcgacctcgcccgtctccccatc
gagccgcgcttcgcgcgcatggtcgtggagtcgaagcgcacgaacaccagccgtgaggtg
ctcgctatcgtggcgggcctcaccatccaagacccgcgcgagcgcccgctcgagaagcgc
ggccgcgccgacgagctgcacgcccgcttcgccgaccccacgagcgacttcctcaccctg
ctcaacctctggaactacctcgacgagaagcagcgcgagctgagctccagcgcgttccgc
cgcctctgcaaggccgagttcctcaactacctgcgcatccgcgagtggcaagacgtctac
cggcagctccggcagctcgcgaagcccctcggcctcaccctcggcgagccgagcgtcaac
cccgacggcatccaccgctccctgctctccgggctgctctcgcagatcggcctgcgcgac
caggccaagcgcgactacctcggcgcccgccagacgcgcttcatgatcttccccggttcc
accctcgccaagaagcagccgagcgccgtcatgagcgccgagctcgtcgagaccagccgc
ctcttcgcccgcatgaacgcggcgatcgacccggcctgggccgagtcgctggcgggcgac
ctggtgaagcgcagctactccgagccgcactgggagaagaagcagggcgccgccgtcgcc
tacgaacgcgtgacgctgttcggggttcccatcgtggcgcgccggcgcatccagttcgcc
cgggtcgacccggagtacgcccgcgaactcttcatccgccacgccctggtcgagggcgag
tgggagtcgcagcaggccttcgaccgcgccaaccgggcgttccggcgcgagctcgagcag
ctcgaggagcgctcgcggcgccgcgacatcctgctcgacgacgaggcggtgttcgagttc
taccaggcgcgcatcccgcgcgacgtgctctcgcagcgcaccttcgaagggtggtggaag
aaggcgcggcacgacgaccccgacctcctcaccatgaccctcgagaccctgctgcccgag
ggcgcccccgaggtcgacgagaccgagttccccgcgatgtggcagcagggcgaccagcgc
ctcgcgctcagctaccgcttcgagccgggcgccgacgacgacggcgtcaccgcgaccgtg
ccgctcgccctcctgccgcgcctcgaggagcgcgccttcgagtcgcaggtgcccgggttc
cgccgcgagctcgtggtggcgctcatcagggtgctgccgaagcggctgcgcgtgaacttc
gtgcccgccaccgactgggccgggcggttgctcgacgagatcccggatgcgcagggcacg
tcaggcgccgacgcccccgccttcctcgatgcgctggcgaagacgatgacgcgcctcgcc
catgtgcaggtcacggctgccgacttcgagcgcgatcgtctgcccgagcacctgcgggtg
acgttccgggtggtcgacgagcgcgggcgcacggtgggtgcgggcaaggatctcgccgcg
ctgcagtcgaagctcgccgacgcggcccgcgcgagcatcgcgcgcgcgtcgggtgcggtg
ggcggcgggtcgggcgcgggtctcgatccggcctcgcgcgtcgcctccgccggggcgcgc
cgcggcgccccggccggacccgccggcgcaggtggcggcgcccgcgcaggtgcagcgggc
ggcccgagtggcccgggtggcccgagcagcggcaccgcaggcaccccttcaccccgcttc
gccgaacgcacgggcctcaccacctgggacgtcggcgacctcccccgccacgtcgacacc
gcccagcacggtggcgtcatccgcgcctacccggccctcgtcgaccaaaagacctccgtc
tccctccgcctcctcgccaccgccgacgagcagcagcgcaccaccccggccggtgtgctg
cgcctgctgcagctcgcggtaccgagccccgcctcctacgtgcgcgaccatctcacgcag
aacgagaagctccttctcgccacgagcccctaccagaacgtgaacgcgctcttcgacgat
gcgatgctggcctgcgccgaggaggcgctgcgggcactccaccccgacggcctggtctgg
agcgccgccgagttcgaggccgtgcgcgaccgcctctcgaaggccgttctccccctgctc
gaccagaccatcacgaccgtggtgcgcatcctgagcggtgttcgcgacgtggagcgcgcc
atcaagtcggtgacgagcatggccctgctgcccgcggtcaccgatgcgcgggagcagctc
gccgcgctcgtcttccccgggttcgtcgcccgcaccgggctggcccgcctcggccacctg
ccgcgctacctcgcgggaatcgtctaccgcctcgagaagctctccgacaacccggcgcgc
gaccgcgcctggatgaacgaggtgcagaccgcgacggcccggtacacggatgcgggcggc
agcatccccctcgcaccgcactcccccgagaacctggtgcgggcccgctggctgctcgag
gaactccgcatcggcctgttcgcccagcccctcggcaccgccgaacccgcctccctgcag
cgcatcacgaagctcctcgcctga
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