Herbiconiux sp. SALV-R1: HL652_08825
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Entry
HL652_08825 CDS
T06594
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hea
Herbiconiux sp. SALV-R1
Pathway
hea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HL652_08825
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hea03019
]
HL652_08825
03016 Transfer RNA biogenesis [BR:
hea03016
]
HL652_08825
Enzymes [BR:
hea01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HL652_08825
Messenger RNA biogenesis [BR:
hea03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HL652_08825
Transfer RNA biogenesis [BR:
hea03016
]
Prokaryotic type
tRNA degradation factors
HL652_08825
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
RNase_PH_C
KH-I_KHDC4-BBP
KH_KhpA-B
CdsD_C
KH_2
KH_5
Motif
Other DBs
NCBI-ProteinID:
QJU53725
UniProt:
A0A6M5IZ12
LinkDB
All DBs
Position
complement(1827413..1829710)
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AA seq
765 aa
AA seq
DB search
MEGPEIKFAEAVLDNGKYGTRTVRFETGRLAQQAQGAVAAYLDEETMLLSATSVSKHPKD
NFDFFPLTIDVEERSYAAGKIPGSFFRREGRPSTEAILVCRLIDRPLRPSFVNGLRNEVQ
VVITVLSIAPDEFYDSLAINAASASSQISGVPFSGPIGGVRLALMPGYGTEPDQWVVFPK
HSQLEEAVFDLVVAGRVVENGDGSSDVAIMMVEAEATEGSWNLIKAGATKPNEAVVAEGL
EAAKPFIKQLVEAQKSLADQAAKAIQEYPIFLAYSQQAYDAVAELAYDELVGIYQIADKI
ERQNADDALKERVKAAIQAKVEAGELGGDVPPMVSAAYKSVTKVVVRGRILRDGVRIDGR
GLADIRPLDAEVAVIPRVHGSAIFQRGETQILGVTTLNMLKMEQQIDSLSPITHKRYLHH
YNFPPYSTGETGRVGSPKRREIGHGFLAERALVPVLPSREEFPYAIRQVSEALGSNGSTS
MGSVCASTLSLLNAGVPLRAPVAGIAMGLVSDEVDGETRYAALTDILGAEDALGDMDFKV
AGTSEFVTAIQLDTKLDGIPSSVLDGALKQAKAAREAILNVLNAAIDQPDEMAPTAPRVI
SVQIPVDKIGELIGPKGKTINAIQDETGADISIEEDGTVYIGAVDGPSAEAARAQVNAIA
NPQNPEVGEQFLGTVVKIATFGAFVSLLPGKDGLLHISEVRKLAGGKRVENVEDVLGVGQ
KILVEITKIDDRGKLSLAPVLAEADPADTEGSAAHSEGPEAPAEG
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
ttggaaggtcctgagatcaagttcgccgaagccgttctcgacaacggcaagtacggcacc
cgcacggtccggttcgagaccggccgtctcgcgcagcaggcccagggagccgtcgccgcg
tacctcgacgaggagacgatgctgctctccgcgacgagcgtgtcgaagcaccccaaagac
aacttcgacttcttcccgctgaccatcgacgtcgaagagcgttcctacgccgccggcaag
atccccggctcgttcttccgtcgtgagggccgcccctcgaccgaggcgatcctggtctgc
cgtctcatcgaccgcccgctgcgcccgtcgttcgtcaacggcctccgcaacgaggtgcag
gtcgtcatcacggtgctgtcgatcgcgcccgacgagttctacgactcgctcgccatcaac
gcggcctccgcttcgtcgcagatctccggtgtgccgttctccggccccatcggcggtgtg
cgcctcgcgctcatgcccggctacggcaccgagcccgatcagtgggtcgtgttcccgaag
cactcgcagctcgaggaggccgtgttcgacctcgtcgtcgccggccgcgtggtggagaac
ggcgacggctcgtccgacgtcgccatcatgatggtggaggccgaggcgaccgagggttcg
tggaacctcatcaaggcgggcgccacgaagcccaacgaggcagtcgtggccgagggtctc
gaggcggcgaagccgttcatcaagcagctggtcgaggcgcagaagtcgctcgccgaccag
gccgcgaaggccatccaggagtacccgatcttcctcgcgtactcgcagcaggcctacgac
gccgtggccgagctcgcctacgacgagctcgtcggcatctaccagatcgccgacaagatc
gagcgccagaacgccgacgacgccctcaaggagcgcgtcaaggccgccatccaggccaag
gtcgaggccggcgagctgggtggcgacgtgccgccgatggtctcggccgcctacaagtcg
gtcaccaaggtggtcgtgcgcgggcgcatcctgcgcgacggcgtgcgcatcgacgggcgc
ggcctcgccgacatccgtccgctcgacgccgaggtcgcggtcatcccgcgcgtgcacggc
tcggccatcttccagcgcggcgagacccagatcctgggtgtcaccacgctcaacatgctg
aagatggagcagcagatcgactcgctgagcccgatcacgcacaagcgctacctgcaccac
tacaacttcccgccctactcgaccggtgagaccggccgcgtgggctcgccgaagcgtcgc
gagatcgggcacggcttcctcgccgagcgcgccctcgtgccggtgctgccctcccgcgag
gagttcccctacgccatccgtcaggtgtcggaggccctcggctcgaacggctccacctcg
atgggctcggtctgcgccagcaccctgtccctgctgaacgccggtgtgccgctgcgcgcc
ccggtcgccggcatcgcgatgggcctcgtctccgacgaggtcgacggtgagacccgctac
gcggcgctcaccgacatcctgggtgctgaggatgcgctcggcgacatggacttcaaggtc
gccggcacctcggagttcgtcaccgccatccagctcgacacgaagctcgacggcatcccc
tcgtcggtgctcgacggtgcgctcaagcaggccaaggccgcccgcgaggcaatcctcaac
gtgctgaacgcggcgatcgaccagcccgacgagatggcccccacggcgcctcgcgtcatc
tcggtgcagatccccgtcgacaagatcggcgagctgatcggcccgaagggcaagaccatc
aacgccattcaagacgagaccggcgccgacatctcgatcgaggaagacggcaccgtgtac
atcggcgccgtcgacggcccctcggccgaggccgcccgcgcccaggtcaacgccatcgcg
aacccgcagaaccccgaggtgggcgagcagttcctcggcaccgtcgtgaagatcgcgacc
ttcggcgcgttcgtgtcgctgctcccgggcaaggacggactgctgcacatctccgaggtg
cgcaagctcgccggcggcaagcgggtcgagaacgtcgaagacgtgctcggcgtgggccag
aagatcctggtcgagatcaccaagatcgacgaccgcggaaagctctcgctcgccccggtg
ctcgccgaggccgaccccgccgacaccgagggttccgccgcccacagcgagggccccgag
gctcccgccgagggctga
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