Herbiconiux sp. SALV-R1: HL652_09935
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Entry
HL652_09935 CDS
T06594
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hea
Herbiconiux sp. SALV-R1
Pathway
hea03420
Nucleotide excision repair
hea03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HL652_09935
03430 Mismatch repair
HL652_09935
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hea03400
]
HL652_09935
Enzymes [BR:
hea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HL652_09935
DNA repair and recombination proteins [BR:
hea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HL652_09935
MMR (mismatch excision repair)
Other MMR factors
HL652_09935
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
AAA_12
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
QJU53916
UniProt:
A0A6M5J481
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All DBs
Position
complement(2065285..2067096)
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AA seq
603 aa
AA seq
DB search
MTGSSADDLLTALDPEQSVAARALLGPVCILAGAGTGKTRAITHRIAYGVATGVYSPNRV
MALTFTSRAAAELRSRLRPLGAGGVAARTFHAAALSQLNYFWPQVVGGEAPKIIDNKAKA
IAHAAELMKLRVDTATLRDIAAEIEWRKVSNLSIEEYGLAARTSRTLPSNLGVEQMLELQ
QRYEALKDERRQLDFEDVLLATAGMIELEPSVAIQVREQYRFFVVDEFQDVSPLQHHLLE
LWLGTRRDLCVVGDASQTIYSFAGASADYLLGFERRHPSATVVSLERNYRSTEPIVAAAN
RLMRGRPGALTLHAASRQAAEPHEARTAPPATGAPATAPPPTAPPATGAARAPEPPEPVV
TAYRDDLAEAAGVAARIAALVAEGVAPNDIAVLYRVNSQSAPLEQALTDAGVSYQLRGGT
RFFDQPDVKRAVMELRAASVSITEEPLFKSVSDVLRSRGWTQHEPEGVGAVRDRWESLNA
IMGLAESMPAGTTFREFTDELMARQASQHEPTVRAVNLATLHSAKGLEWPVVFIVGVAEG
LIPISHASGLEGADEERRLLYVGITRARERLELSWAAAGVRRGVDRQPSRFLQETGIRTR
DEA
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atgacgggttcgtctgccgacgacctcctcaccgcgctcgaccccgaacagagcgtcgcc
gcgcgcgccctgctcggaccggtgtgcatcctcgccggtgcgggcacgggcaagacgcgg
gcgatcacgcatcgcatcgcctacggcgtggcgaccggggtctactcgccgaaccgggtg
atggccctcaccttcaccagtcgcgccgccgccgaactgcggtcgcgcctccggccattg
ggcgcgggcggggtggcggcgcgcacctttcacgccgccgcgctgtcgcagctgaactac
ttctggccgcaggtggtgggcggcgaggccccgaagatcatcgacaacaaggcgaaggcc
atcgcccacgccgccgagcttatgaaactgcgggtcgacacggcgaccctgcgcgacatc
gccgccgagatcgagtggcgcaaggtctccaacctcagcatcgaggagtacgggctcgcg
gcgcgcacctcgcgcacgctgccgtcgaacctcggcgtcgagcagatgctcgagctgcag
cagcgctacgaggcgctgaaggatgaacgccgccagctcgacttcgaagacgtgctgctc
gccacggcgggcatgatcgagctcgagccctcggtcgccatccaggtgcgtgagcagtac
cgcttcttcgtggtcgacgagttccaggacgtctcgccgctgcagcaccacctgctcgag
ctgtggctcggcacccgtcgtgacctctgcgtggtgggcgacgccagccagaccatctac
tccttcgcgggtgcgagcgccgactacctgctcggcttcgagcgccgccacccgagcgcc
accgtcgtgtcgctcgagcgcaactaccgctccaccgagcccatcgtcgccgccgcgaac
cgattgatgcgggggagacccggggcactcaccctccacgcggcgtcgcgccaggcggcg
gaaccgcacgaggcccgcaccgccccgccggccaccggtgcgccggccaccgcgccgccg
cccaccgccccgcctgccaccggtgcggcccgagcccccgagccgcccgagcccgtcgtc
accgcctatcgcgacgacctcgccgaggcggccggcgtcgccgcccgcatcgccgctctg
gtggcggagggcgtcgccccgaacgacatcgccgtgctctaccgcgtgaactcccagtcg
gcgcccctcgagcaggcgctcaccgacgcgggcgtcagctaccagctgcgcgggggcacc
cggttcttcgaccagcccgatgtgaagcgcgccgtgatggagctgcgggccgcatcggta
tcgatcaccgaggagccgctgttcaagtcggtgagcgacgtgctgcgctcccgggggtgg
acccagcacgaaccggagggcgtcggcgccgtgcgcgaccgctgggagtcactcaacgcg
atcatgggcctggccgagtcgatgcccgccggcacgaccttccgcgagttcaccgacgag
ctgatggcccggcaggcctcccaacacgaacccacggtgcgcgccgtcaacctcgccacc
ctgcactcggcgaagggtctcgagtggccggtggtgttcatcgtgggtgtggccgagggg
ctcatcccgatcagtcacgcgagcggcctcgagggtgccgatgaggagcgccgcctgctc
tacgtgggcatcacgcgggcacgggaacggctcgagctgtcgtgggcggcggccggggtg
cgtcgaggagtcgaccgtcagccctcccgtttccttcaggagaccggcatccgcactcgg
gatgaggcctga
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