Herbiconiux sp. SALV-R1: HL652_09950
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Entry
HL652_09950 CDS
T06594
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
hea
Herbiconiux sp. SALV-R1
Pathway
hea03420
Nucleotide excision repair
hea03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HL652_09950
03430 Mismatch repair
HL652_09950
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hea03400
]
HL652_09950
Enzymes [BR:
hea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HL652_09950
DNA repair and recombination proteins [BR:
hea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HL652_09950
MMR (mismatch excision repair)
Other MMR factors
HL652_09950
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
AAA_30
Viral_helicase1
DEAD
Motif
Other DBs
NCBI-ProteinID:
QJU53919
UniProt:
A0A6M5J290
LinkDB
All DBs
Position
complement(2069274..2072654)
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AA seq
1126 aa
AA seq
DB search
MSDALFDLADLDRPEAFAPPGQTPEPTVGRIIPAVEIADRLGLPRPTPQQQAVIEAPLEP
RIVVAGAGSGKTETMANRVVWLIANGLVEVPEVLGLTFTRKAAGELAERIRKRLRELAAS
GLVQREPDPFDVPAISTYNAFANGIFRESAVTIGREGEAAVLSEASAWQLARKVVVGSGD
PRLLQVDRSVDVVTSAVLALSRALSENVVGSAEVAEYAERFVSLAELPTGSARVKNVYRA
LQSAIDAVAPLPLVLELADAYSAEKVRRGYVEFSDQIALALQIVESSPGVVADYRDRYRV
VLLDEYQDTSVVQTRLLAALFRDHPVMAVGDPHQSIYGWRGASAANLARFPSDFAAPRGS
APFALSTSWRNPTLVLDSANALVGPLSSGAGVAVEQLSARPGAGEGVVDTVFAETVADEA
RAVAGWLAERLKPEVPGGTRPSAALLCRSVKKIEPFTAALDARGIPYHVLGIGGLLAQPA
VADLVSTLRVLYYPTAGADLLRVLGGARWRVGPKDLMALRALASWIAERDHRFQRLDSAV
SQRLRGSVVAEEDRSIVDALDFVATADPTHSALAGFSEPGIERLRRVAVQLAQLRTRAGL
GLVDFVDLVQQELLLDIEVLASPHAAEGRAGLEAFSEQLVAFLALDPSAGLGDFLAWLEE
AEKRERLEPRTEDAEPGTVQILTIHGAKGLEWDVVVVPRLVEGELPGEPRSKLGWLTFGE
LPFDFRGDAAELPALAWHGLEAQNEFGAVLDEFREANAQHYAAEQRRLAYVAVTRARHSL
LLSGSFWSTGMKPRPPSRYLRELEAAGVVAEGVLPEASEFEQNPLAESENWIEWPRDPLG
GRRSRLELAADAVRAADPGVTTPWDAEIELLLAERAAVGAGDRLEVPVRIPASRFKDYVS
DPEAVVRALRRPMPERPFRQTRLGTRFHTWVEERFRGGDDHLVDLPFSGGDLVDVFDDEL
EPFDDELEPLGSEPQPLGVEPREAAPATPAGSGIADHGDEEERMRALIEVFEASEFASRK
PVEVETEIHLVLGGRVIVCKIDAVFPEGDGFLVVDWKTGKAPRDADDLELKQLQLALYRL
AYARWKGIDPERVDACFYFVPEDSVVRPERLYPEEELERLVLTSLS
NT seq
3381 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacgcgctgttcgacctcgccgacctcgatcgccccgaggcgttcgcgccgccc
gggcagacgccggagccgacggtcggccgcatcatcccggccgtcgagatcgccgaccgg
ctggggctgccgcggcccaccccgcagcagcaggccgtcatcgaggcgccgctcgagccc
cgcatcgtcgtggcgggagccggcagcggcaagaccgagacgatggccaaccgggtggtg
tggctcatcgccaacgggctggtcgaggtgcccgaggttctcggcctcaccttcacgcgc
aaggcggcgggtgagctggcggagcgcatccgcaagcgactgagggagctcgcggcctct
ggcctggtgcagcgcgagcccgacccgttcgacgtgcctgccatctcgacctacaacgcc
ttcgcgaacggcatcttccgcgagagcgccgtgacgatcgggcgcgagggcgaggcggcg
gtgctgagcgaggcctcggcctggcagctggcgaggaaggtggtggtgggcagcggtgac
ccgcggctgctgcaggtcgaccgctcggtcgacgtcgtgacctcggcggtgctggcgctc
agccgtgcgctctccgagaacgtggtgggctcggcggaggtcgccgagtacgcggagagg
ttcgtgtcgctcgccgagctgccgacgggctcggcccgggtgaagaacgtctaccgggcg
ctgcagagcgccatcgacgccgtcgccccgctgccgctcgtgctggagctcgccgacgcc
tactccgccgagaaggtgcgccgcggctacgtggagttctccgaccagatcgcgctcgcg
ctgcagatcgtcgagagctcgccgggtgtcgtcgccgattaccgcgaccgttaccgggtg
gtgctgctcgacgagtaccaagacaccagcgtcgtgcagacgcgactgctcgcggccctg
ttccgcgaccaccccgtcatggccgtcggcgacccgcaccagtcgatctacggctggcgc
ggggccagcgcggcgaacctcgcgcggttcccctccgacttcgcagccccccgtggctcg
gcgcccttcgccctgtcgacgagctggcgcaaccccaccctggtgctcgactcggccaac
gccctggtcggcccgctctcctcgggcgcgggtgtggccgtcgagcagctctcggcgcgg
cccggcgccggggagggcgtcgtcgacaccgtcttcgccgagaccgtcgccgacgaggca
cgtgccgtggccggctggctcgccgagcggctgaagcccgaggtacccgggggcacccgg
ccgagcgcggcgctgctgtgccgctcggtgaagaagatcgagccgttcacagcggccctc
gacgcccggggaatcccgtaccacgtgctcggcatcggcggcctgctcgcccagccggcc
gtggccgacctcgtgtcgacgctgcgggtgctctactacccgaccgccggcgccgacctg
ctgcgggtgctcgggggcgcccgctggcgggtcggcccgaaagacctcatggccctgcgc
gctctggcctcctggatcgccgagcgcgaccaccgcttccagcgcctcgactccgcggtt
tcacagcgactgcgcggctcggtggtggccgaggaggacaggtcgatcgtcgacgccctc
gacttcgtcgccaccgccgacccgacgcactccgcgctcgccggcttcagcgaaccggga
atcgagcgcctgcgtcgcgtcgccgtgcagctcgcccagctgcgcacccgggcaggcctc
ggactcgtcgacttcgtcgatctcgtgcagcaggagctgctgctcgacatcgaggtgctc
gcgagcccccacgctgccgagggccgcgccgggctcgaagcgttctcggagcagctcgtg
gcgttcctcgcgctcgacccatcggccggtctcggcgacttcctggcctggctcgaggag
gccgagaagcgcgagcgcctcgaaccgcgcaccgaggatgcggagcccggcacggtgcag
atcctcaccatccacggcgcgaagggcctggagtgggatgtcgtcgtcgtgccccgcctc
gtggagggtgagctcccgggcgagccccggtcgaagctcggctggctcaccttcggcgag
ctgccgttcgacttccgcggagacgccgccgagctccccgctctggcctggcacggtctc
gaggcgcagaacgagttcggtgcggtgctcgacgagttccgcgaggcgaacgcccagcac
tacgcggccgagcagcgccggctggcctacgtcgcggtgacgcgggctcggcactcgctg
ctgctcagcggctcgttctggtcgacggggatgaagcccaggccaccgagtcgctacctg
cgagagctggaggcggccggagtcgtcgccgagggggtgctgccggaggcgtcggagttc
gagcagaatccgctcgccgagtcggagaattggatcgagtggccccgcgatcccctcggt
ggccggcgcagccgcctcgagctcgcggccgacgccgtgcgtgccgccgaccccggtgtc
acgaccccgtgggacgcggagatcgagctgctgctcgccgaacgagccgctgtgggggcc
ggagaccggctcgaggtgccggtgcgcattccggcctcacggttcaaggactacgtctcc
gaccccgaggccgtggtgagggccctgcggcggccgatgcccgagcgccctttccggcag
acgagactgggtacccgcttccacacctgggtggaggagcggttccgcggcggcgacgac
cacctcgtcgacctcccgttctccggtggcgacctggtcgacgtcttcgacgacgagctc
gagccgttcgacgacgagctcgagcctctcggcagcgaaccccaaccgctgggtgtcgag
ccgcgcgaggccgctcccgcgacgccggccgggtcgggcatcgccgatcacggcgacgag
gaggagcggatgcgcgctctcatcgaggtgttcgaggcctccgagttcgcgtcacggaag
cccgtggaggtggagaccgagatccacctggtgctcggcggccgggtgatcgtgtgcaag
atcgacgcggtcttccccgagggcgacggtttcctcgtcgtcgactggaagacgggcaag
gcgccccgcgacgccgacgacctggagctgaagcagctgcagctcgcgctctaccgcctc
gcctacgcgcggtggaaggggatcgatcccgagcgggtcgacgcctgcttctacttcgtt
cccgaagacagtgtggttcgaccggagcgtctctaccccgaggaggaactggagcgcctg
gtgctcacctcgctgagctga
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