Herbiconiux sp. SALV-R1: HL652_10505
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Entry
HL652_10505 CDS
T06594
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hea
Herbiconiux sp. SALV-R1
Pathway
hea03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hea00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HL652_10505 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hea03400
]
HL652_10505 (mfd)
Enzymes [BR:
hea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HL652_10505 (mfd)
DNA repair and recombination proteins [BR:
hea03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HL652_10505 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
MFD_D3
IstB_IS21
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
QJU54011
UniProt:
A0A6M5IXL0
LinkDB
All DBs
Position
complement(2185706..2189329)
Genome browser
AA seq
1207 aa
AA seq
DB search
MLQGLISALSRASTVERGLANAGRDSDFSMPEGIRGPFLAAMLNRRVERGLPAAMLVVTA
TGRESEKLRESLASYLPAACIVEFPAWETLPHERLSPSAEIVGRRIDALRRLVDWQRASD
AGQNPEPIVVVASVRAALQPIAANLADLDPIVLEKGARGFDLSALSLQLVELAYSRVDMV
TRRGEYAVRGGILDVFPPIADHPYRVDFFGDEVDEIRAFSVADQRSLPDPVEQVVLPPSR
ELLLSEPVRQRAREMQHEFPSLAGMLEKISAGIPVEGMESLAPALLDQLVTIAHYLPEGA
AVAVVSPERVATRAVNLSETNREFLAAAWTAATAGAEAPIDLASGEFITLTDLRHAAGTG
RPWWTLSEFQLGPDESEVLPEHRELEEHLTIRIQADAVPSFSGNADGAIAHVASRLADGW
VVAVAAKGQGLVERAADVLGEREVAARIVDDLPADPEPGAAYLVQAGVEHGFELPELKIA
LIGETEFYGRTVGYDNRQVKKLASRRKNVVDPLQLKAGDFVVHQTHGIGKFLELTQREVS
SGGRNAVKTTREYLVIEYAPSKRGYPGDKLYVPTDQLDLLSRYVGGEAPGLSKMGGSDWA
AAKGKARKAVRDIAVELVKLYSARMASKGHAFGPDTPWQHELEEAFPFQETPDQLTVIDE
VKADMERPIPMDRLLSGDVGFGKTEIAIRAAFKAVQDGKQVAMLVPTTLLVRQHLETFQE
RFAGFPVHLKALSRFQTEKESRETIAGLADGTVDVVIATHRILSDTIVFKDLGLLIIDEE
QRFGVEHKDALKKLKTNVDILAMSATPIPRTLEMAVTGIREMSTLATPPEDRHPILTFVG
PYSDKQVAAAIRRELLREGQVFFVHNRVSSINRVAAQLAELVPEARIAVAHGQMNEHVLE
QVIVDFWERKFDVLVSTTIIETGIDIANANTLIVDRADKYGLSQLHQLRGRVGRGRERAY
AYLLFDEHKPLSETANDRLSTLAANNELGSGMQVALKDLEIRGAGNLLGGEQAGHIAGVG
FDLYLRMIGEAVSTFRGDVAEGQTELRLELPVEAHIPDDYVDSERLRLEAYQKLSTASAP
TASDDSIDHVVEELTDRYGEPPQPVQNLLAVSRLRRQAQKASLSEVVTMGSNLRIAPADL
PDSLQVRLKRMYPGSKYFAQTSSISLPMPVVDGAPLADADLIAWASQLLDALFPAAKAEP
AGTAASA
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atgcttcagggcctgatctctgcgctctcgcgcgcctcgacggtggaacgagggctggcg
aacgccggccgtgacagcgatttctcgatgcccgaaggcatccgcgggccgttcctcgcg
gccatgctgaaccggcgtgtcgaacgcggtctcccggcggcgatgctcgtcgtcaccgcc
accggccgcgagtcggagaaactccgcgagtcgctcgcgagctacctgcccgccgcgtgc
atcgtcgagttcccggcctgggagacgctcccgcacgagcgcctcagcccgagtgcggag
atcgtgggccgccgcatcgacgccctgcggcgtctcgtcgactggcagcgcgcatccgat
gccggtcagaaccccgaaccgatcgtcgtggtcgcctcggtgcgggccgccctgcaaccg
atcgcggcgaacctcgccgacctcgacccgatcgtgctcgagaagggcgcccgcggcttc
gatctctcggcgctgtcgctgcagctcgtcgaactcgcctactcgcgcgtcgacatggtc
acgcggcgcggggagtacgcggtgcgcggcggcattctcgacgtcttcccgccgatcgcc
gatcacccctaccgcgtcgacttcttcggcgacgaggtcgacgagatccgcgcgttctcg
gtggccgaccagcggtcgctgcccgacccggtggagcaggtcgtgctcccgccgagccgc
gagctgctgctcagcgagccggtgcggcagcgggcccgcgagatgcagcacgagttcccg
agcctcgccggcatgctcgagaagatctcggcgggcatcccggtcgagggcatggagtcg
ctcgcccccgccctgctcgaccagctcgtcaccatcgcccactacctgcccgagggcgca
gccgtcgccgtcgtgtcgcccgagcgggtggcgacgcgcgccgtgaacctctccgagacg
aaccgcgagttcctcgccgcggcctggacagccgccaccgcgggcgccgaggcccccatc
gacctcgcctcgggcgagttcatcaccctcaccgacctgcggcacgccgccggcaccggc
cggccctggtggacgctcagcgagttccagctcggccccgacgagagcgaggtgctgccc
gagcaccgcgagctcgaggagcacctcaccatccgcatccaggccgacgccgtgccgagc
ttctcgggcaacgccgacggggccatcgcccacgtggcgtcgcggctcgccgacgggtgg
gtcgtcgccgtggctgccaaaggccaggggctcgtcgagcgcgccgccgacgtgctcggg
gagcgcgaggtcgccgcccgtatcgtcgacgacctccccgccgatcccgagcccggggcc
gcctacctcgtgcaggccggcgtcgagcacggcttcgagctgcccgagctcaagatcgcc
ctcatcggcgagaccgagttctacgggcgcaccgtcggctacgacaaccgccaggtgaag
aagctcgcgagccggcgcaagaacgtcgtcgacccgttgcagctcaaggccggcgacttc
gtggtgcaccagacccacggcatcggcaagttcctcgagctcacccagcgcgaggtgtcc
agcggcggccgcaacgcggtgaagaccacgcgcgagtacctggtgatcgagtatgcgccg
agcaagcgcggctacccgggcgacaagctctacgtacccaccgaccagctcgacctgctc
tcccgctatgtcggcggcgaggcccccggcctcagcaagatgggcggcagcgactgggcg
gccgccaagggcaaggcgcgcaaggccgtgcgcgacatcgccgtcgagctcgtgaagctc
tactcggcgcgcatggcctcgaagggtcacgccttcggccccgacacgccgtggcagcac
gagctcgaagaggccttcccgttccaggagacgcccgaccagctgaccgtcatcgacgag
gtgaaggccgacatggagcggcccatccccatggacaggctgctctccggcgacgtcggc
ttcggcaagaccgagatcgccatccgcgccgcgttcaaggcggtgcaagacggcaagcag
gtcgccatgctcgtgcccaccactctgctcgtgcggcagcacctcgagaccttccaggag
cgcttcgccgggttccccgtgcacctcaaggcgctcagccgcttccagaccgagaaggag
tcgcgcgagaccatcgcggggctcgccgacggcaccgtcgacgtcgtcatcgcgacccac
cgcatcctgagcgacaccatcgtgttcaaagacctcggcctcctcatcatcgacgaggag
cagcggttcggtgtagagcacaaggatgcgctgaagaagctgaagacgaacgtcgacatc
ctcgcgatgagtgcgacgcccattccgcgcacgctcgagatggcggtgaccggcatccgc
gagatgtcgacgctcgcgacgcccccggaggatcgccaccccatcctcaccttcgtgggg
ccgtactccgacaagcaggtcgcggccgccatccgtcgtgagttgctgcgcgaggggcag
gtgttcttcgtgcacaaccgggtgtcgtcgatcaaccgggtcgccgcgcagctcgccgag
ctggtgcccgaggcgcgcatcgcggtggcgcacgggcagatgaacgagcacgtgctcgag
caggtgatcgtcgacttctgggagcgcaagttcgacgtgctcgtgtcgaccacgatcatc
gagaccggcatcgacatcgccaacgcgaacacgctcatcgtcgaccgggccgacaagtac
gggctgtcgcagctgcaccaactgcgcgggcgtgtgggacgcgggcgcgagcgcgcctac
gcctatctgctgttcgacgagcacaagccgctgtcggagaccgcgaacgaccggctctcc
accctcgccgccaacaacgagctcggctcgggcatgcaggtggcgttgaaagacctcgag
atccgcggggcgggcaacctgctcggcggcgagcaggccgggcacatcgcgggtgtcggg
ttcgacctctacctgcgcatgatcggcgaggcagtctcgaccttccgcggcgacgtcgcc
gagggccagaccgagctgcggctcgagctccctgtcgaggctcacattcccgacgactac
gtcgacagcgagcggctgcgcctcgaggcctatcagaagctctcgaccgcctcggcgccc
accgcctccgacgactcgatcgaccacgtcgtcgaggagctcaccgaccgctacggcgag
ccgccgcagccggtgcagaacctgctcgccgtgtcgcgcctccgccgccaggctcagaag
gcgtcgctcagcgaggtggtgacgatgggctcgaacctgcgcatcgcccccgccgacctg
cccgactcgttgcaggtgcgcctgaagcgcatgtacccgggctcgaagtacttcgcgcag
accagctcgatctcgctgcccatgccggtcgtcgacggcgccccgctcgccgacgccgac
ctcatcgcctgggcctcccagctcctcgacgccctcttccccgcggcgaaggcggagccg
gcgggcacggcggcgtcggcctga
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integrated database retrieval system
