Helicobacter pylori BM012A: U063_0132
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Entry
U063_0132 CDS
T02939
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
heb
Helicobacter pylori BM012A
Pathway
heb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
heb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U063_0132
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
heb03019
]
U063_0132
03016 Transfer RNA biogenesis [BR:
heb03016
]
U063_0132
Enzymes [BR:
heb01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
U063_0132
Messenger RNA biogenesis [BR:
heb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
U063_0132
Transfer RNA biogenesis [BR:
heb03016
]
Prokaryotic type
tRNA degradation factors
U063_0132
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
S1
PNPase
S1_2
Motif
Other DBs
NCBI-ProteinID:
AHA87506
LinkDB
All DBs
Position
130242..132308
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AA seq
688 aa
AA seq
DB search
MDFITINSSNKTEEFALKQVAKQATSSLMYRLGKTIILASVCIEREPVSEDFLPLVVQFL
EKSYAAGKIPGGFVKREGRAQDFEILTSRLIDRTLRPLFPKDYRYPTQITLMVLSHDIEN
DLQVSALNAASAALFLAHIAPIKSVSACRIARIGNEFIINPNTSLLNQSSLDLFVSGTKE
SLNMIEMRSLGQQLNALEEPLMLKALELAQKSLKETCTLYEEIFTPHQNELFFKESQGIV
FNERLLDLLKNQYFDEIIKGIESSALSERENVFNEIARKISEAHSEFSLEEIELSLEKVK
KTEIRRMIIKDKIRPDKRALEEVRPILIESDLLPMAHSSILFTRGQTQSLVVGVLGTDND
AQTHESLEHKAPIKERFMFHYNFPPFCVGEASSIGAASRRELGHGNLAKRALETSIKNKE
QVIRLVSEILESNGSSSMASVCAGSLALYASGVEIYDLVAGVAMGMVSEGQDHAILSDIS
GLEDAEGDMDFKIAGNLEGITAMQMDTKMSGIQLEILYQALFQAKEAREHILKIMHEAKE
KIVINFSHLPTTEIFNVAPDKIVEIIGQGGRVIKEIVEKFEVKIDLNKPSGEVKIMGNKE
RVLKTKEFILNYLHSLDQELEQYAIDEVLEAQVKRIVDFGAFLSLPKGGEGLLRKQNMDK
CQVVLKEGDSIRCRVISFNKGKIALDLA
NT seq
2067 nt
NT seq
+upstream
nt +downstream
nt
atggattttatcaccatcaattctagtaacaaaaccgaagaattcgctctcaaacaagtg
gccaaacaagccaccagctctctaatgtatcgcttaggaaaaaccatcattttagcgagc
gtgtgtatagaaagagagcctgtgagtgaagattttctgcctttagtggtgcagttttta
gaaaaatcttatgcagccggtaaaatcccgggcggttttgttaaaagagaaggtagggcg
caagattttgaaatcttaacctctaggctcatagacaggactttacgccctttattccct
aaagattaccgctaccctacacagatcactttaatggttttaagccatgatattgaaaac
gatttgcaagtctctgctttaaacgccgcttcagccgctctctttttggcccatatcgct
cctattaaaagcgtgagtgcttgcagaatcgctaggattggtaacgaatttatcattaac
cctaacacaagccttttgaatcaatccagtttggatttgttcgtgtctggaacgaaagag
agtttgaacatgatagaaatgcgctctttggggcaacaattaaacgctttagaagagcct
ttaatgctaaaagctttagaattggctcaaaaaagtttgaaagaaacttgcacgctttat
gaagagattttcacgccccaccaaaacgagctgtttttcaaagagagtcaaggaatagtc
tttaatgaaaggctgttagatttattaaaaaatcagtattttgatgaaatcatcaaaggc
attgaaagttctgctttgagcgagcgagaaaatgttttcaatgaaattgccagaaaaatc
agtgaagcccactcagaattcagtttagaagaaattgaattgtctttagaaaaagtgaaa
aagactgagataaggcgcatgatcattaaggataaaatccgcccggataagcgcgcgtta
gaagaagtgcggcccattttgatagagagcgatttgctccctatggcgcatagctccatt
ttattcactagggggcaaacgcaaagcttagtggtaggggttttaggcacggataatgac
gctcaaacccatgagagtttggagcataaagcccctatcaaagagcgcttcatgtttcat
tacaatttccctcctttttgcgtgggcgaagcgagttctattggcgcggcttcaaggcgc
gaattagggcatgggaatttggctaaaagagccttagaaacgagcattaaaaataaagaa
caggtgatacgattggtttctgagattttagaaagcaatggttcaagctcaatggcgagc
gtgtgcgcaggctctttagccctttatgcaagcggtgtggaaatttatgatctagtcgct
ggggtggctatgggcatggtgagcgaagggcaagatcacgctattttaagcgatattagc
ggcttagaagacgcagaaggcgatatggattttaagattgctgggaatttagaaggcatt
acggccatgcaaatggataccaaaatgagcggtatccagttagaaattttataccaagcc
ttattccaagctaaagaagcgcgagagcatattttaaaaatcatgcatgaagcgaaagaa
aagatcgtgatcaatttttcccatttgcccacaacggagatttttaatgttgcgcccgat
aaaattgtagaaattatcggtcaaggggggcgtgtgattaaagagatagtagaaaagttt
gaggttaaaattgatttgaataaaccgagcggtgaagtgaaaatcatggggaataaagaa
cgggttttaaaaactaaggaatttattttaaactatttgcattctttagatcaagaattg
gagcaatacgctattgatgaggtgttagaagctcaagtgaaacgaatcgtggattttggg
gcgtttttaagcttgcctaaggggggcgaaggcttgttaagaaagcaaaacatggacaag
tgtcaagtggttttaaaagaaggcgatagcatcaggtgtagggtgattagtttcaataag
ggtaaaatcgctttggatttggcttaa
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