Helicobacter pylori BM012A: U063_0589
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Entry
U063_0589 CDS
T02939
Name
(GenBank) Cold-shock DEAD-box protein A
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
heb
Helicobacter pylori BM012A
Pathway
heb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
heb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U063_0589
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
heb03019
]
U063_0589
03009 Ribosome biogenesis [BR:
heb03009
]
U063_0589
Enzymes [BR:
heb01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
U063_0589
Messenger RNA biogenesis [BR:
heb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
U063_0589
Ribosome biogenesis [BR:
heb03009
]
Prokaryotic type
rRNA helicases
U063_0589
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
P-loop_SecA
AAA_30
AAA_22
NAT10_TcmA_helicase
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AHA87947
LinkDB
All DBs
Position
577463..578941
Genome browser
AA seq
492 aa
AA seq
DB search
MELNQPPLPTEIDDDAYHKPSFNDLGLKESVLKSVYEAGFTSPSPIQEKAIPAVLQGRDV
IAQAQTGTGKTAAFALPIINNLKNNHTIEALVITPTRELAMQISDEIFKLGKHTRTKTVC
VYGGQSVKKQCEFIKKNPQVMIATPGRLLDHLKNERIHKFVPKVVVLDESDEMLDMGFLD
DIEEIFDYLPSEAQILLFSATMPEPIKRLADKILENPIKIHIAPSNITNTDITQRFYVIN
EHERAEAIMRLLDTQAPKKSIVFTRTKKEADELHQFLASKNYKSTALHGDMDQRDRRSSI
MAFKKNDADVLVATDVASRGLDISGVSHVFNYHLPLNTESYIHRIGRTGRAGKKGMAITL
VTPLEYKELLRMQKEIDSEIELFEIPTINENQIIKTLHDAKVSERTISLYEQLTEIFEPS
QLVLKLLSLQFETSKIGLNQQEIDAIQNPKEKTPKPSNKKTHQHERARSFKKGQHRDRHP
KTNHHSKKPKRR
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atggaattgaatcaaccaccactccctacagaaattgatgatgacgcttaccataagcct
agttttaatgatttgggcttaaaagaatcggttttaaaatccgtttatgaagccggtttc
acttccccaagccccattcaagaaaaggccattccggctgttttgcaaggccgagatgtc
atcgcacaagcccaaacaggcacaggaaaaaccgccgctttcgctctgcccattatcaac
aaccttaaaaacaaccacaccatagaggccttagtgatcacgcccaccagagaattagcc
atgcaaattagcgatgagatttttaaattgggcaaacacactaggactaaaaccgtgtgc
gtgtatggaggccagagcgttaaaaaacaatgcgaattcattaagaaaaacccccaagtg
atgatcgctacaccaggaagactgctcgatcacttaaagaatgagcgcatccataaattt
gtgcctaaagtggtcgttttagatgaaagcgatgaaatgctggatatggggtttttagac
gatattgaagagatttttgactacctccctagcgaagcgcagattttgcttttttcagcc
acgatgccagagccgattaaaagactagcggataagattttagaaaaccctattaaaatc
catatcgctccttctaatatcactaacaccgacatcacccaacgcttttatgtgatcaac
gagcatgagagggccgaagcgatcatgcgccttttagacacccaagcgcccaaaaagagc
attgttttcacgcgcactaaaaaagaggccgatgaattgcaccaattccttgcttctaaa
aattacaaaagcaccgctttgcatggggatatggatcaaagggatcgccgctcttctatc
atggcgtttaaaaaaaatgacgctgatgtgttggtggctacagatgtggcgagccgtggg
ctagatattagcggtgtaagccatgtgttcaattaccatttgcccctaaacaccgagagc
tatatccatcgcatcgggagaaccgggcgagcgggcaaaaaaggcatggcgatcacttta
gtaacccccttagaatacaaagagcttttacgcatgcaaaaagaaattgattcagagatt
gaactttttgaaatccccaccattaacgaaaatcagatcatcaaaaccttacatgacgct
aaagtgtctgaaaggactatcagcctttatgaacagcttaccgaaatttttgagccgtct
caattggttttaaaacttttgagtttgcagtttgaaaccagtaaaatcggcttgaaccag
caagaaattgacgcgattcaaaaccctaaagaaaaaacgccaaaaccctctaacaaaaaa
acgcaccaacatgagcgagcgcgttctttcaaaaagggtcagcacagagacagacaccct
aaaacaaaccaccattctaaaaaacccaaacgccgttaa
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