Helicobacter pylori BM012A: U063_1065
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Entry
U063_1065 CDS
T02939
Name
(GenBank) Hydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
heb
Helicobacter pylori BM012A
Pathway
heb03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
heb00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U063_1065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
heb03019
]
U063_1065
Messenger RNA biogenesis [BR:
heb03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
U063_1065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HD
KH_1
RNase_Y_N
HDOD
KH_KhpA-B
KH_2
Motif
Other DBs
NCBI-ProteinID:
AHA88410
LinkDB
All DBs
Position
complement(1088377..1089888)
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AA seq
503 aa
AA seq
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MKKIYYARGQATLKSASAKAKLMEFQAKSFVEAEEIRMKSQECKLQQQYENKNLQLQTHF
DKKEAHLKHLEAQHKEFVRDEKRYLEKEKKELEKERQILEQERENFKKQRAVCKEAQAKA
LDAMLNYMAYTKDEIKSMILEQLEEELEAQKSALIRRYEKEAKEEGKKKSYAILAEATAR
FAGNYAIENLTTRIALPCSDYIGRVIGKDGKNIEAFKKVSGVDIEFSEDSSELCLSSFNL
YRREVASETLKILIEDGRIQPNRIEEVYHRVARNLEKELLSEGESVVLELELGVMEDELK
ILIGKMRYRSSFGQNALQHSKEVALLAGLIAEQLGGDKKLARRAGILHDIGKALTQELGR
DHVNLGVEVCKRHKEDPVVINAIYAHHGHEEILSVECASVCAADALSAGRPGARRKSDEE
YAKRMQALEEIALEFDGVEKAYAMESGRELRVIVKSNQVRDNQVPIIARKIAKKIEENAQ
YVGEVGVQVVRESRFKTTATLKQ
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagatctattacgctagagggcaagccactttaaaaagcgcttcagctaaagcc
aaattaatggagtttcaagcgaaatctttcgtggaagctgaagagatacgcatgaaaagc
caagaatgcaaattgcaacagcaatatgaaaacaagaatttgcaactccaaacccatttt
gacaaaaaagaagcgcatttgaagcatttagaagcgcaacacaaagaatttgtaagagat
gaaaaacgctatttagaaaaggaaaaaaaagagcttgaaaaagaacgccaaattttagaa
caagagagggaaaatttcaaaaaacagcgcgctgtttgcaaagaagctcaagccaaagcg
ctagacgcgatgctcaattacatggcttataccaaagatgaaattaaaagcatgatttta
gagcaattagaagaagaattagaagcccaaaaaagcgcgttaatcaggcgttatgaaaaa
gaagccaaagaagagggcaagaaaaaatcgtatgccattttagcggaagcgacagcccgt
tttgcgggtaattatgcaatagagaatttaacaactcgtatcgctttgccttgctcagat
tatatcggtcgtgtgataggcaaagacgggaaaaatattgaagcgtttaaaaaggtcagt
ggggtggatatagaatttagcgaagatagcagcgaattgtgtttatccagtttcaatctt
tatcggcgtgaagtagcgagcgagacgcttaaaattttaatagaagacggccgtatccag
cctaacaggattgaagaggtttatcatagagtcgcgcgcaacctggaaaaagaattgctt
tctgagggggagagcgtggtgttagaattggagcttggggttatggaagatgagcttaaa
attttaataggcaaaatgcgttatcgctctagttttgggcaaaacgccttacagcattct
aaagaagtcgctcttttagccggcttgattgcagagcagcttgggggggataaaaagctc
gccagaagagccggtattttgcatgatattggtaaagcgctcactcaagagcttgggaga
gaccatgtgaatttgggggttgaggtgtgcaagcgccataaagaagatccggttgtgatc
aatgcgatttatgcccaccatgggcatgaagagattttgagcgtggagtgcgcgagcgtg
tgtgcggctgatgcgctttctgcagggcgtcctggggctagaagaaagagcgatgaagaa
tacgctaaacgcatgcaagctttagaagagatcgcgctagaatttgatggggtggaaaaa
gcgtatgcgatggagagcgggcgagaattaagagtgattgtcaaatccaaccaagtcagg
gacaatcaagtgcctattattgccagaaagatcgctaaaaagatagaagagaacgctcag
tatgtgggcgaagtgggcgtgcaagtggtgcgagaaagccgtttcaaaacgaccgctacg
ctcaagcaataa
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