Halarcobacter ebronensis: AEBR_0610
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Entry
AEBR_0610 CDS
T06616
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
hebr
Halarcobacter ebronensis
Pathway
hebr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hebr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AEBR_0610 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hebr03400
]
AEBR_0610 (mfd)
Enzymes [BR:
hebr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AEBR_0610 (mfd)
DNA repair and recombination proteins [BR:
hebr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AEBR_0610 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
TRCF
UvrB_inter
CarD_TRCF_RID
ResIII
Cas3-like_C_2
SNF2-rel_dom
GpA_ATPase
Motif
Other DBs
NCBI-ProteinID:
QKF81118
LinkDB
All DBs
Position
607113..610100
Genome browser
AA seq
995 aa
AA seq
DB search
MNSIYEFLKNLQEQNSLKKCQLLVVNDDLQAQMASDIVSFLGFKPFVLSDFRANFGDDLL
SFSTELQEITKVLNEYYSYKKEDKILISPLRTISFPLPKEKCFDSFEISFADTINIEELK
SKLYNWGYYFVDIVTSEAEASIRGDIIDICPLGSDSGYRISLFDDEVESIRKFDIEDQKS
SKEEIDSFKITPAFLALDEQTLEEINEQIEKVESDAFIKDIHSLGFWYLGELGEYLPQKL
NSFISQEALDELDEAYVFEEKRVNKDKFLTLPQIYKAKEYQEIAPANIKEFLTFHEGKKV
TIISSTEAKVKAFDLDLTNKEINYVFDSFIINVVGNSEVVISLNKEIKKRRKKRIKLVID
ELQNGDFVVHEKHGIGQYQGIEPVVVMGAKRDFVVITYAGNDKLLLPVENIDSIDRYVAD
GNSYAVVDKLGRGSFAKLKEKVKEKLFAIANDIIKIAAARELVNGIKINTDKKILNDFVL
TSGFEYTKDQTRSIREIYEDLSSGRVMDRLLSGDVGFGKTEVAMNAILATVLDGYQAIFV
CPTTLLASQHFLSMRKRFESFGVKMAKLDGKTSAKEKTSIKNALLNGELQLVVGTHSLLG
IKTKNLALVIIDEEHKFGVKQKEKLKELREDVHIFSMSATPIPRTLNLALSKLKGMSSLL
TPPKERLGVRTYVKEYSDKLIKEIVLREKRRGGQLFYVHNNIASIEAKKADILELLPNIK
VEIIHSKIKPEEAEKIIERFDNKEFDILLATSIVESGLHLPNANSIIIDGADRFGIADLH
QLRGRVGRSDKEGFCYYVVEDKKKITNDAIKRLVALESNSYLGSGTALAHQDLEIRGGGN
IIGEAQSGHIKQIGYGLYLKMLEDALATLSGELKEQSKTVDIKLAISAYISSDYIYEDRV
RLELYRRLSKCQNRDEVYIIEEEMEDRFGKPDTPTKQFLELIIIKILALSKGIKTISSYE
MNITFTKADDTKETIKSPSKDDDDIISTTLQYLRK
NT seq
2988 nt
NT seq
+upstream
nt +downstream
nt
gtgaatagtatttatgaatttttaaaaaatttacaagagcaaaatagtttaaaaaagtgt
caacttcttgttgtaaatgatgatcttcaagctcaaatggcttcagatattgtctctttt
ttaggttttaaaccttttgttctaagtgattttagagcaaactttggagatgatttactc
tctttttcaactgaacttcaagagataacaaaagttttaaatgagtattactcatataaa
aaagaggataaaattttaatctctccacttagaacaatctcttttcctttgccaaaagag
aaatgttttgactcttttgaaatctcttttgcagatacaataaatattgaagagttaaaa
tcaaaactatacaactggggatattactttgtagatattgtaacctctgaagcagaagcc
tctattagaggagatattattgatatttgtccattaggcagtgatagtggatatagaatc
tcactctttgatgatgaagttgaaagtattagaaagtttgatatagaagaccaaaaatct
tctaaagaggagatagattcttttaaaataaccccagcttttttagctttagatgaacaa
acacttgaagagataaatgaacaaatagaaaaagtagaatctgatgcttttatcaaagat
attcactctttgggattttggtatttaggtgagcttggagagtatcttcctcaaaaacta
aactcttttataagccaagaagccttagatgagttagatgaagcttatgtttttgaagag
aaaagagtaaataaagataagtttttaacccttcctcaaatatacaaagctaaagagtat
caagagattgcaccagcaaatataaaagagtttttaactttccatgaaggtaaaaaagta
actattatctcatccactgaagccaaagtaaaagcctttgatttggatctaacaaataaa
gagatcaactatgtttttgattcatttattataaatgttgttggaaatagtgaagttgtt
atctctttaaataaagagataaaaaagagaagaaaaaagagaattaaacttgtaattgat
gagcttcaaaatggtgattttgttgtccatgaaaaacatggtattggtcaatatcaagga
atagagcctgttgttgtaatgggagcaaaaagggattttgttgtaattacttatgcagga
aatgacaaacttcttttgcctgttgaaaacatagattccatagatagatatgttgccgat
ggaaactcttatgctgttgttgataaactagggcgtggaagttttgcaaaactaaaagag
aaagtaaaagagaaactctttgcaattgctaatgatattataaaaatagcagcagcaaga
gagcttgtaaatggtataaaaattaatacagataaaaaaatcttaaacgactttgttctt
acttctggttttgaatatacaaaagatcaaactagaagtataagagaaatctatgaagat
ttaagctctggaagagttatggatagacttttaagtggtgatgttggttttggtaaaaca
gaagttgccatgaatgcaatacttgcaacagttttagatggatatcaagctatttttgtt
tgtccaactacacttttggcttcacaacactttttaagtatgagaaaaagatttgaaagt
tttggtgtaaaaatggcaaaactagatggtaaaacatctgcaaaagagaaaacctctatt
aaaaatgctcttttaaatggggagttgcaacttgttgttggaactcactctttacttgga
atcaaaacaaaaaatcttgcccttgtaataatagatgaagagcacaagtttggtgtaaaa
caaaaagagaaactaaaagagttaagggaagatgtacatattttctctatgagcgcaacg
ccaatcccaagaactctaaatcttgctttatctaaactaaaaggtatgagttcactttta
actcctccaaaagagagattaggagtgcgaacttatgtaaaagagtatagtgacaaactt
atcaaagagattgttttaagggaaaaaagaagaggaggacaactcttttatgttcataat
aatattgcttcaatagaggcaaaaaaagctgatattttagaactattgccaaatataaaa
gtagagataattcactcaaaaataaaaccagaagaggctgaaaagataatagaaagattt
gataataaagagtttgatattttattggcaacctctattgttgagtcaggacttcatctt
ccaaatgcaaactctattataatagatggagctgatagatttggtattgcagatctacat
cagcttcgaggaagagttggaagaagtgacaaagaagggttttgttattatgtggttgaa
gataaaaagaaaatcacaaatgatgcaatcaaaagacttgtagcactagaatcaaactca
tatttaggaagtggaacggctcttgctcaccaagatttagagataagaggtgggggaaat
atcataggtgaagcccaaagtggacatattaaacaaataggttatggtctttatttaaaa
atgcttgaagatgctttggcaactttaagtggagagctaaaagagcagagtaaaactgtt
gatataaaacttgctatttcagcctatattagcagtgattatatttatgaagatagagta
aggcttgaattatacagaagactctctaaatgtcaaaatagagatgaggtttatataata
gaagaggagatggaggatagatttggtaaaccagatactccaactaaacaatttttagag
ttaattattataaaaatactagctttatcaaaaggaattaaaacaattagttcttatgag
atgaatattacttttacaaaagctgatgatacaaaagagaccataaaatcgccatcaaaa
gatgatgatgacataatatcaactactttacaatatttaagaaaatag
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