Halarcobacter ebronensis: AEBR_1197
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Entry
AEBR_1197 CDS
T06616
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma70 factor
KO
K03086
RNA polymerase primary sigma factor
Organism
hebr
Halarcobacter ebronensis
Pathway
hebr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
hebr00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AEBR_1197 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hebr03021
]
AEBR_1197 (rpoD)
Transcription machinery [BR:
hebr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AEBR_1197 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_ner
Sigma70_r4_2
RRN3
Ribosomal_60s
FliG_M
Motif
Other DBs
NCBI-ProteinID:
QKF81691
LinkDB
All DBs
Position
complement(1217627..1219525)
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AA seq
632 aa
AA seq
DB search
MSTKDLNKDIEGIVKEYKDSILTYEKLIKIFPKAPSTANIKKLIALIQLYNVTLISSQEQ
AKRMNAEEAKKKEDLRNKLKESDDDVFDLLKNKELLEWSRSDSPVRMYLREMGQIPLLTK
EEEIEISKKIEMGEDVILDAICYVPYLIDFILEYREPLVNRERKVKELFRNFDDEDSDDD
DNLDDDDDNDNDIDDDDDNDNDNDIDVDDDTPKKSNRKLDKRAETIIVAFKSLEKAKKEW
LKFQSKETAKSDEEYDQMQFNLAVAFKKRILKEALLDLGPTSKLITEIVKAMETALKSES
GFETELKKLEYKLPLFNDTLLKNHQKILDNIVNLSKVQITSMVPEATMVSTYMEIKKLFQ
TAEASKGGFDLEPEELLDVLEQIKRGKKITDEAKTRMAKSNLRLVVSIAKRYTNRGLPFL
DLIQEGNIGLMKAVDKFEYKKGYKFSTYATWWIRQAISRAIADQARTIRIPIHMIETINR
INKIIRKGIQENGKEPDVEEIAKEVGLPVDKVKQVIKITKEPVSLEAPIGSDDDGKFGDF
VPDEKAPTPVDHIMKEDLQGQIDQILAQLNEREQAVVRMRFGLMDDASDRTLEEIGKELS
VTRERVRQIESSAIKKLKHPKVGKNLKNYVES
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atgagcacaaaagatttaaataaagatattgaaggcattgtaaaagagtacaaagattca
attttaacctacgaaaagctaatcaaaatctttccgaaggctccctcaacagcaaacatc
aaaaagcttatagctcttatccaactatataatgtaacacttattagttcacaagaacaa
gctaaaagaatgaatgcagaagaggctaagaaaaaagaggacttaagaaataaattaaaa
gagagtgatgatgatgttttcgatttattgaaaaataaagagttactagaatggtcaaga
tcagattcacctgttagaatgtatctaagagagatgggacaaattccacttttaacaaaa
gaggaagagatagagatctctaaaaaaattgagatgggagaggatgtaatccttgatgct
atctgttatgttccatatctaattgattttattttagagtatagagaacctttagtaaat
agagaaagaaaagttaaagaacttttcagaaactttgatgatgaagactctgatgacgat
gataatttagatgatgacgatgacaatgacaacgatattgatgatgacgatgataacgac
aatgacaatgacattgacgtggatgatgacactcctaaaaaaagtaatagaaagcttgat
aaaagagctgaaacaattattgttgctttcaaatctttggaaaaagcaaaaaaagagtgg
cttaaatttcaatcaaaagagactgcaaaatctgatgaagagtatgaccaaatgcaattt
aatttggctgttgcttttaaaaagagaattttaaaagaggctcttttggatttaggtcca
acttcaaaattgattactgagattgtaaaagcaatggaaactgcgcttaaatcagaatca
ggatttgaaacagaattaaaaaaattagagtataaactaccactatttaatgatacatta
ttaaaaaatcaccaaaagattttagataatattgtaaacttatctaaggtacaaattacc
tctatggttcctgaagctactatggtttctacatatatggagattaaaaaacttttccaa
acagcagaagcatctaaaggtggatttgatttagagccagaagagttattggatgttcta
gagcagattaaaagaggtaaaaagattaccgatgaagcaaaaactagaatggcaaaatct
aaccttagacttgttgtatctattgcaaaaagatatacaaacagaggtttacctttcctt
gaccttatccaagagggtaatataggtcttatgaaagctgttgacaagtttgagtataaa
aaagggtataaattctctacttatgctacttggtggattagacaagctatttcaagagca
attgctgatcaagcaagaactattagaattccaattcacatgattgagactattaataga
atcaataaaatcattagaaaaggtattcaagaaaatggtaaagagccagatgtagaggaa
atcgcaaaagaggttggattacctgttgataaagttaaacaagtaattaaaatcactaaa
gagcctgtatctcttgaagcacctattggttcagatgatgatggtaaatttggagacttt
gttccagatgaaaaagcaccaacaccagttgaccatattatgaaagaggatttacaagga
caaattgatcaaatcttagctcaattaaatgagagagaacaagcagttgttagaatgaga
tttggacttatggatgatgcaagtgatagaacacttgaagagattggtaaagagctttct
gtaacaagagaaagagtaagacaaattgaatcaagtgctattaaaaagttaaagcatcca
aaagttggtaaaaaccttaaaaattacgttgagagttaa
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