Candidatus Hydrogenosomobacter endosymbioticus: HYD_3610
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Entry
HYD_3610 CDS
T07863
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
hec
Candidatus Hydrogenosomobacter endosymbioticus
Pathway
hec03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hec00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HYD_3610 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hec03021
]
HYD_3610 (rpoA)
03400 DNA repair and recombination proteins [BR:
hec03400
]
HYD_3610 (rpoA)
Enzymes [BR:
hec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HYD_3610 (rpoA)
Transcription machinery [BR:
hec03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HYD_3610 (rpoA)
DNA repair and recombination proteins [BR:
hec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HYD_3610 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
Motif
Other DBs
NCBI-ProteinID:
BDB96228
UniProt:
A0ABM7V9T2
LinkDB
All DBs
Position
complement(416436..417488)
Genome browser
AA seq
350 aa
AA seq
DB search
MISRNWESLIRPYKVALERESDSRFCGTVVVEPLERGYGHTIGNTLRRVLLSSIQGAAVT
SVKIDGVLSEFSGIPGVHEDVTDIVLNLKLLRFKMHGAGPKKVRISVKGPCVVTAGMISS
DEGLEVLEPMQKICSIDETGSINMEITVDKGRGYLSAEAASELVVGHRAIGEILVDAHFS
PVKKVSYSVEQTRVGQMTDYDRLFINVETDGSITPKEAVSVAACILRDQFAVLTSFGSST
VEKGVQGTASSGGDMNKAALLRLLSRKVNDLDLNVRCLNCLKNIDIVYVADLVKHKESDL
LKTPNFGRKSLNEIKERLAELGLSLGMEEVPDVFSDSETDNSLKDGARLL
NT seq
1053 nt
NT seq
+upstream
nt +downstream
nt
gtgataagtcgtaattgggagagcctcataaggccttataaggttgctcttgaaagagag
tctgactcgagattttgtggaacggtcgttgttgagcctttagaaaggggctatggtcac
accattggaaatacgttgcgcagggtattgctttcaagtatacagggcgcagcggttact
tctgtgaagatagatggtgtgttgtctgagttttccggtataccaggagtgcatgaggat
gttactgatatcgtacttaacctgaagctgcttaggttcaagatgcatggtgctgggcct
aagaaagttaggatttcagttaaggggccgtgcgtggtgactgctgggatgatatcttca
gatgaagggctggaagtgctggagcctatgcagaagatttgttcgattgacgagacaggg
tccattaatatggaaattacggtagataaggggcgtgggtatttgtcagcggaagcggcc
tcagagttagttgttggacatagggcgattggtgaaattcttgttgacgctcattttagc
ccggtgaaaaaagtatcttatagtgtggagcagacaagggttggccagatgacagattat
gacaggcttttcataaatgttgaaacggatggatctatcactcccaaagaggctgtgagc
gtagcggcgtgtattttgagggatcagttcgctgttcttactagttttggctcgtcgact
gtcgagaagggggttcagggaactgcttcttctggcggagatatgaataaagcggcgctt
cttaggttgctgtctaggaaagttaacgatcttgatttgaatgttaggtgtttgaattgt
ctgaaaaacatagatatagtgtacgttgcagatttggtaaagcacaaggagtctgatttg
cttaagactcctaattttgggcgaaagtcattaaacgagataaaggagaggcttgctgag
ctggggctatcgctcggtatggaggaggtccctgatgtttttagcgactcggagactgat
aattcgttaaaagatggtgctcgtttgctatag
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