Candidatus Hydrogenosomobacter endosymbioticus: HYD_3830
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Entry
HYD_3830 CDS
T07863
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
hec
Candidatus Hydrogenosomobacter endosymbioticus
Pathway
hec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYD_3830 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hec03019
]
HYD_3830 (pnp)
03016 Transfer RNA biogenesis [BR:
hec03016
]
HYD_3830 (pnp)
Enzymes [BR:
hec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HYD_3830 (pnp)
Messenger RNA biogenesis [BR:
hec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HYD_3830 (pnp)
Transfer RNA biogenesis [BR:
hec03016
]
Prokaryotic type
tRNA degradation factors
HYD_3830 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
KH_1
PNPase
S1_RRP5
OB_RRP5_4th
Motif
Other DBs
NCBI-ProteinID:
BDB96250
UniProt:
A0ABM7V8X4
LinkDB
All DBs
Position
complement(437503..439656)
Genome browser
AA seq
717 aa
AA seq
DB search
MVKTHKKEVQWAGRSLVFETGEFARQADGAVLVRYGGTSVLCVATAADKDGFDCGFLPLS
VHYQEKAYAAGKIPGGFLKRESKPSDHEVLASRIIDRSIRPLFSSDFGREIQIICSVFSY
SDDSDPVIAATIGASAAAMLSGIPFSGPACIARVGMKGSGGFMLNPSRESLEASQLDLTV
AGTLDAVLMVESGAMELSDEDMLLAIEHGRSAFAPVIDAIGQLCKECSEHTDRKKSGKFA
SYYNRSKEQECCVSEDKVISAIDAESGRLSSVCDDNDKERRKALLKLIADDVFRSLGFSG
EDGKSCGTEFEEARACFDKMFSERWKFFVRNRIVSEGKRIGGRGANDVRDIHSRVGLFER
VHGSALFTRGGTQAVVVATLGSSKDAQMVDSLDGVRHETFLLHYNFPNFSVGEVGKVGPP
GRREVGHGNLAWRALKSVLPSQEEFPYTVRLVSEITESDGSSSMATVCGAALAAMDAGVP
LKRMVSGIAMGLIKEGGKVVVLSDISGDEDHLGDMDFKVAGTEKGITALQMDLKVSGISM
DILRSAVKQANEGREFIMSEMKKVLSEPRKKISESAPRITTIKIPVDKIKDLIGAGGKNI
KSLCEMGAEIDVSQDGVVKVFAASDDISKRVVERIRGTTVVPSVGDVFTGKVVGLVDFGA
FVNFCGQQDGLVHVSEICDRRIDSPADVLTVGQEVVVKVVGFDKRGKIKLSIKQAKE
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atggtaaaaacccacaaaaaagaagtgcagtgggcggggcgttctcttgtttttgaaaca
ggagagtttgctcggcaggcagatggagctgttttagtgcgttatggcggaacgagcgtt
ctgtgcgtcgctactgctgctgataaggatggattcgattgtgggtttttgccgctttct
gttcattatcaagagaaagcgtacgccgctgggaaaatacctggtggttttttgaaaaga
gagagcaagccgtctgatcatgaggttttagcttctcgtataatagacagaagcatcagg
ccgttatttagctctgattttggaagagaaatacagattatatgtagcgtgtttagttat
agcgatgactcggatcctgttattgcagcaacaatcggagcgtcagcggcggctatgttg
tctgggataccatttagtggaccggcctgtattgctcgagttggcatgaaggggagcgga
ggttttatgcttaatccttcgagagaatcgcttgaagcatcccagcttgatctgacggtg
gctgggacactggatgctgttctcatggttgagtctggagctatggagctatctgatgag
gatatgttgcttgctattgaacatggtaggtctgcatttgctcctgttatagacgctata
ggtcagctctgcaaggaatgctccgaacacacagatcgaaagaagagcggaaagttcgct
tcctattataataggtctaaggaacaagagtgctgtgtttctgaggataaagttatttct
gctatagatgctgagtcgggcagactttcttctgtctgcgatgataatgacaaggagaga
cggaaggcgctgctcaaactcatagcagatgatgtgttccgttctttgggattttcagga
gaagacggaaagtcttgcggcactgaatttgaagaagcaagggcctgttttgacaagatg
ttttctgagcgctggaaattttttgtgagaaatagaattgtgtctgaagggaaaaggatt
ggcggcaggggagctaatgatgttcgcgatatacactctagagtgggccttttcgagagg
gtgcatggaagcgccttgtttacgcgtggcggcactcaagcggttgttgttgcaaccctt
ggaagctctaaagacgcgcagatggttgactcgcttgatggcgtacggcatgagactttc
ttgctgcactataactttccgaatttttctgttggagaagtagggaaagtaggtcctcca
ggtaggcgcgaagttgggcatggaaatcttgcatggagagcacttaagtctgtgttgccg
agccaggaggagtttccgtatactgttaggctggtgtccgaaatcacagagtctgatgga
tcttcctctatggctactgtttgtggggcggctcttgctgcaatggatgcaggtgttcca
ctcaaaagaatggtgtcaggaatagccatggggcttattaaagagggtggtaaagttgta
gttctctctgatataagcggggacgaagaccacctgggagatatggattttaaggttgcc
ggtacggaaaagggaataacggcccttcagatggacctgaaggtgtctggtatatcgatg
gatattttgcgctctgctgttaagcaagcgaatgaagggagagagtttataatgtcggaa
atgaaaaaggttttgagtgagccgcgcaaaaagataagtgaaagcgctccaagaattaca
acaataaagattccagttgataagataaaagatctgatcggtgctggagggaagaatata
aagtctttgtgcgaaatgggggctgaaatagacgtttctcaggatggtgttgttaaggta
tttgctgcgtctgacgatatttctaagcgcgttgttgaaagaattagagggacgacggtt
gtcccctctgttggggatgtctttaccggcaaggtcgtggggcttgttgatttcggtgcg
tttgtgaatttttgcggacagcaggatgggcttgtgcatgtgagcgaaatttgcgataga
agaatcgatagtcctgcggatgtgctgacagttggacaggaagttgtggttaaagttgtt
gggtttgataagcgaggcaaaataaagctgagcataaaacaagcgaaagaatag
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