Candidatus Hydrogenosomobacter endosymbioticus: HYD_4660
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Entry
HYD_4660 CDS
T07863
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
hec
Candidatus Hydrogenosomobacter endosymbioticus
Pathway
hec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYD_4660 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hec03019
]
HYD_4660 (rne)
03009 Ribosome biogenesis [BR:
hec03009
]
HYD_4660 (rne)
Enzymes [BR:
hec01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
HYD_4660 (rne)
Messenger RNA biogenesis [BR:
hec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HYD_4660 (rne)
Ribosome biogenesis [BR:
hec03009
]
Prokaryotic type
rRNA processing factors
HYD_4660 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BDB96333
LinkDB
All DBs
Position
534923..537289
Genome browser
AA seq
788 aa
AA seq
DB search
MSEKVMLIDQSLEMEARVAVLNKDVLEEFDCEFSHSKSKKGNIYLAKVARIEPSLQAVFI
DYGDERHGFLPLSNIHPSYYNLSETAKKQQEIASLEAKSAHTQRSSCSDLCDISISIGED
ESPINEIASQPQEQLENTDSGTDDEDCSPASNSKPDIISQQYNVKDVIKRNQILLVQAIK
DTRNNKGVAFTTYLSLPGRLSVLMPNTPKGKGVSKKISNQADRQTLKEMIQDLDIPKEMG
LIIRTAALGKRKTEIKRDSDYLLRMWSDITEKVSKSSAPAIMHEEGDILVKALRDMYTSD
ISKVIVYGDEAFKKAKAFMKVMMPSHARRVVLHKKEEGDLFGNHGINHQIDKMYNPTVRL
ASGGSIIISQTEALVAIDVNSAKATRSKNFDTTSLKINLEAATEIAKQITFRNLSGLIVI
DFIDMQNNSSCAQVETQLKKALKNDRANITFGKISQFGVLEMSRQRSTQSIAEKISSCCP
NCLGSGRTPSVQFMAIRIIRETKEIAQKLDQETLHVVTSGEMAGYILNDQRAMLAEIESL
YSKRIFFSSDQSFYNHVFKIQDVKYDICNSDTDNKSAKNKNDTKESKKHFDGELNKNEAR
EKSRKQNPDDKAASVDAKGGDEISSSLIANSHETKRESAPGSSGIEESDTPQDTKKLKGK
RRRRPKQKKHEKPYTALEKSEKENETMKTDSELAALQEGRASQTPIIDKNDEPFYNHPVA
VETDDLYGARELQKTDGDARFEQPKQKKIRPQRKKFRKKHVEQEQGATVTAQNYSYKGYE
DQNQKGIA
NT seq
2367 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaaaagtaatgttaatcgatcagtcgctagaaatggaggcgagagtcgccgta
ttgaacaaggatgtgttggaagaatttgattgtgagttttcgcatagtaagtcaaaaaaa
ggaaacatatatcttgcgaaagtcgcacgtatagaaccgtctcttcaggctgtttttata
gactacggagacgagagacacggtttcttgccgctctccaacatccacccttcttactat
aacctcagcgagacggcaaaaaaacagcaggaaatagcatctctcgaagcaaagtcggcg
cacacgcagcgcagcagttgttcagacctgtgcgatatttcgatctctattggagaagac
gaatcgcctataaacgagatcgccagccaacctcaggagcagctagaaaacaccgactct
gggactgatgacgaagactgttcccctgcaagcaacagcaaaccggacattatttctcag
cagtataatgtgaaagatgttataaagcgcaaccaaattctcttagtccaagctataaaa
gacaccagaaataataaaggcgttgcgtttacaacatacctgtctcttccgggaaggcta
agcgttcttatgccaaacacaccaaaaggcaaaggagtgtcaaaaaagatttcaaaccaa
gctgacagacagactcttaaagaaatgatccaagatcttgatattccaaaagaaatgggc
ctcataataagaactgccgctcttggaaaaagaaaaacagagataaagagagattcagac
tatctacttagaatgtggtctgacataacagaaaaagtatctaaatcatctgctcccgcc
attatgcatgaagagggagatatattggtaaaagctttgcgcgatatgtacacatctgac
attagcaaggtcatagtgtatggtgacgaagcattcaaaaaagctaaggcttttatgaaa
gtaatgatgccgagccatgcaagacgcgtcgttttacacaaaaaggaagaaggagacctg
tttggaaaccacggaataaaccaccaaatcgataaaatgtacaaccctaccgttaggctc
gcctctggagggtccataataatatcacaaactgaggctcttgtagcaatagacgtaaat
tcggccaaagccacaagatccaagaattttgatacaacctcgctcaaaataaaccttgag
gccgcaacagaaatcgctaagcaaatcacattcagaaacttatccggactcatagttata
gacttcatagatatgcaaaacaattcgagctgcgcgcaagtggaaacccagctgaaaaaa
gctcttaaaaatgacagagcaaatataacattcggaaagataagccaattcggagtgcta
gaaatgtcaagacaaaggtccacacaaagcatagctgaaaaaatatcttcatgctgtcca
aattgccttgggtctggacgtacaccttctgtccagttcatggccattcgaatcatcaga
gaaacaaaagaaattgctcaaaaattagaccaagagaccctccatgttgtaacttctgga
gaaatggctggttatattttgaacgatcaaagggcaatgctagcagaaatagaatctcta
tattcaaagcgcatatttttctcttctgaccaatctttctataaccacgtgtttaaaatc
caagatgttaagtacgatatctgcaactcagacacagacaataaatcagcaaaaaataaa
aacgatacaaaagaatcgaaaaagcattttgatggcgagctgaataaaaatgaagctaga
gaaaaaagccgaaaacaaaaccctgatgacaaagcggcatctgttgatgcaaaaggcggc
gacgagatatcatcatctcttattgccaattcacatgagaccaaaagagagtctgccccc
ggttctagcggcatagaggagtcagatacccctcaagacacaaaaaaattaaaaggaaaa
agaaggcgtaggccaaaacaaaaaaaacatgaaaaaccatataccgcgttagagaaatcg
gaaaaagaaaacgaaactatgaagacagatagcgagctagccgccctacaagaaggaaga
gcctctcaaaccccgataatagacaaaaacgatgaacccttttataatcacccagttgct
gtcgaaacagacgatttatacggcgcgcgcgagcttcaaaaaactgacggcgacgctcgt
ttcgagcaacctaaacaaaaaaaaatccggcctcaacgcaaaaaattcagaaaaaaacat
gtagaacaagaacaaggcgcaactgttacagctcaaaactatagctataaggggtacgaa
gatcaaaatcaaaaggggatagcataa
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