KEGG   Candidatus Hydrogenosomobacter endosymbioticus: HYD_6840
Entry
HYD_6840          CDS       T07863                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
hec  Candidatus Hydrogenosomobacter endosymbioticus
Pathway
hec03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:hec00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    HYD_6840 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:hec03021]
    HYD_6840 (rpoC)
   03400 DNA repair and recombination proteins [BR:hec03400]
    HYD_6840 (rpoC)
Enzymes [BR:hec01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     HYD_6840 (rpoC)
Transcription machinery [BR:hec03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     HYD_6840 (rpoC)
DNA repair and recombination proteins [BR:hec03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      HYD_6840 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23 Biotin_lipoyl RnfC_N RPOC_hybrid
Other DBs
NCBI-ProteinID: BDB96551
LinkDB
Position
776191..780384
AA seq 1397 aa
MVSGEQRDSRFFGQDFSSKSFDSVKISIASPEQIRSWSFGEVKKPETINYRTFKPERDGL
FCSRIFGPVKDYECLCGKYKRMKYKGVICEKCGVEVTLAKVRRDRMGHIELASPVAHIWF
SKSPPSRMGIILDMSVKNIDRLLYFDGYVVLDPGLTGLEENQILTEDEYYRAQQEYGQES
FRASTGAEAVKEMLANLDLPSLRESLRQELSSSLPEMRKKKVMKRLKLIEAFISSGARPE
WMVLDVLPVMPPDLRPLVPLDGGRFATSDLNDLYRRIINRNNRLRRLIELRAPDMIIKNE
KRMLQEIVDAFFDNGRRGRPIVGSNKRPLKSMSDILKGKHGRFRMNLLGKRVDYSARSVI
TVGPNLKLHQCGLPKKIALELFKPFIYSKLESHGFAPTIKVARAMVERERPEVWDILEEV
VKDRLVLLNRAPTLHRLGIQAFEPILVEGKAIQLHPLVCLAFNADFDGDQMAVHVPLSLE
AQAEARVLMLSSNNILSPANGSPITLPTKDIVLGIYYLSIMREGEKGEGRAFSGLSEMIM
AHQEKTLSMHSKVVTRIDTYNDDGTVSGLQRVETTLGRMIVWDIIPKSNKIKFEKVNKLL
SSEDILELLGCVYSNCKKGDTVEFLDRLVQLGFRYATLSGVSIGQDDMIVPKEKWNIVAE
TRKIVDEFQNQYLDGLITQGERYNKVTDAWTNCADRVAKEMMDEISSDIPGKPLNSVFIM
ANSGARGSPAQMKQLSAMRGLIARHDGSILEHPIVSNLKEGLRAFEYFNGTHGARKGMSD
TALKTAGAGYLTRRLVDVAQDCVITELDCGTDNGVTIRPIVDSGEVVAPMADRVLGRICA
EDVVSPETGELIIARSSMIDIAAVEKLSLAGIESVKCRSVITCESAEGICSMCYGKDLAR
NKLVVVGESVGVIAAQSIGEPGTQLTLRTFHSGGAAQRAAESSFVDALVDGVVKFRNRQV
IKNGSGQTVVMNRHMEIIVCDSYGHESAVYRLVCGAHVFVSEGESVKAGQRLAEWDPYTI
PVIAECDGYVHYVDLVDGVSMKEIIDESSGIAKRTVSDWQKTGRGKGMQPRVVIRGKDGE
QLKLSNGADARYTLVPETVLMVDNGAWVHAGSVIARLSKETYKSRDIVGGLPRIAELFEA
RWPKDPAIMSECDGYVEYGKDYKSRRRVVIVPSVEGEKPFEFFAAKGRMALVQDGDDVKR
GDILVDGNPALQDILRIQGVESLSLHLIKEIQNVYRLQGVKINDKHIEVIIRQMLRKVEI
TDPGDSELLVGDQIARDELKEINKRVESGGGRPASFMPVLQGITKASLHTRSFISAASFQ
ETTRVLIEAAVHGKQDKLIGLKENVIAGKLIPAGTGFVMREMKRKAVSRDVVVRAASSST
ESGVEKDCEDASVREAY
NT seq 4194 nt   +upstreamnt  +downstreamnt
atggtgagcggtgaacagcgcgattcgcgattttttggtcaagacttttcttcgaaaagc
tttgatagcgtgaagatatccatagctagtcctgagcaaattcgctcttggtcgtttggt
gaagtgaaaaagccagagaccataaattaccgcacttttaagccagagagagacgggctt
ttttgctccagaatttttggacctgtaaaagattatgagtgcttatgcggtaagtataag
agaatgaaatataagggagtgatttgcgaaaaatgcggagtagaggttactcttgcgaag
gttcggcgcgacaggatgggacatatagagcttgcgtcgcccgttgcgcacatatggttt
tcaaaatctcctccgagcaggatgggcattatcttggatatgagcgtcaaaaacatagat
cgattgctgtatttcgatggatatgttgtgctcgatccaggtttgacagggctagaagag
aatcaaatcttgacggaggatgagtattacagagctcagcaggaatatggccaggagagt
tttagagcctcgactggagctgaggctgtgaaagaaatgcttgccaacttggatttgcct
tcacttcgtgaatctttaaggcaggagcttagctctagccttccggaaatgagaaagaaa
aaggtgatgaagaggcttaagcttatagaagcttttatatcgtcgggcgcgaggcctgag
tggatggtgttggacgttttgcctgtcatgcctccagatcttcgtcctttggttcctctc
gacggaggcagatttgctacgtctgatcttaacgacctctacagaagaattattaacaga
aataataggcttagacgtttgatagagttacgcgctccagatatgatcataaaaaatgaa
aagcgtatgcttcaggaaattgttgacgcatttttcgataatggtcgacgaggaaggcct
atagtgggcagcaataagcgtcctctgaagtcgatgtctgacatattaaaagggaagcat
ggtcgcttcagaatgaacttgcttggaaagcgcgtcgactattctgctcgttctgttatt
acagttggtccaaaccttaaacttcatcaatgcggtcttccgaagaagatagcgctggag
ctgtttaagcctttcatatattcgaagctagaatcacacggatttgctccgaccataaag
gttgcccgcgctatggtggagcgtgagcgtccagaggtgtgggatatacttgaagaagtc
gtgaaagataggctagtgcttttgaaccgcgccccaacccttcatagacttggaatccag
gcttttgagcctatacttgtggaaggaaaagcgatacagctgcatccgctcgtgtgtctt
gcgtttaacgcggacttcgatggagatcaaatggcagtccacgtcccgttgtctctcgag
gcgcaggcagaggcgcgcgtccttatgctttcttccaacaatatactgagcccggctaac
gggtctccgataacgcttcctacaaaggacattgttcttggaatatactacctttctata
atgagagaaggagaaaaaggcgaggggagagctttttctggtctaagcgaaatgataatg
gcgcatcaagaaaaaactctttcgatgcactcgaaggttgtcacaagaatcgatacatat
aacgacgatgggacagtgtctggattgcagagggtagagaccacgctcggcagaatgatt
gtatgggacataattcccaaaagcaataagattaagttcgaaaaagtgaacaagcttttg
tcgtcagaagatattctcgagcttcttggatgcgtgtatagcaactgtaaaaaaggtgat
actgtggagtttttggatcgccttgtacagcttggtttcagatacgcgacgctgtctggt
gtgtcgattggccaggacgacatgatcgtgccgaaagaaaagtggaatatagttgcagag
acaaggaagatagtagacgagtttcaaaaccaatatcttgacggtcttatcacgcaggga
gaaaggtacaacaaggttacagacgcttggactaattgcgcagatagggtcgcaaaggaa
atgatggatgaaatttctagcgatattccaggaaagcctttgaattccgtgtttataatg
gcaaattctggcgcgaggggatctcccgctcagatgaagcagctgtctgctatgcgcggt
cttatagctaggcatgatggaagtattttggaacaccctatcgtttctaacctgaaggaa
gggttgcgtgcttttgaatattttaacggtacccatggcgcaagaaagggtatgtcagac
accgcgcttaagactgctggagccggttatcttacgcgaaggctggttgatgtcgctcag
gactgcgtcataacggagcttgattgtggaacggataatggagttaccataaggcctatt
gttgatagcggagaagttgttgctcctatggcagacagagtattaggccgtatttgtgcc
gaagatgtggtttcgccagaaactggagagttaataattgctcggtctagtatgatagac
attgctgctgtggaaaagctgtctttggctggaatagaatctgtaaagtgtaggtctgtt
attacgtgcgaatctgcagagggtatttgctctatgtgttatggaaaagatttggcgaga
aataagcttgtggttgtgggagagtccgttggagttatcgctgctcagtccatcggagag
cccggtacacagctcacgcttcgaactttccactcaggtggagcggcgcaaagggcggca
gaatcctcgttcgttgatgctctagttgatggcgttgtcaagtttagaaacaggcaagtg
ataaaaaatggctcaggacaaaccgttgttatgaatcgccatatggaaattattgtgtgc
gattcttatggacatgagagcgctgtgtataggcttgtgtgtggagcgcatgtgtttgtt
tctgagggagagagcgtgaaggctggccagagactagcagagtgggacccatataccata
cctgtgatagcagagtgtgacggttatgtgcactacgtggatcttgttgatggtgtgtcc
atgaaagaaataatagacgagtcatcaggaatagcgaagcgcacggttagcgattggcaa
aagactggtagaggcaagggtatgcagcctagggttgtgatacgcggaaaagatggcgaa
cagcttaagctttctaatggtgcagatgcgcggtatacgttggtaccagaaacagttctt
atggtagacaacggtgcatgggtccatgcaggaagtgtgatagccaggttgtcgaaagaa
acatataagtctcgagatatcgttggaggtttgcctagaatagccgaactgtttgaggct
agatggcctaaagatcctgctattatgagtgaatgtgatggttatgtggagtatggtaaa
gattacaaatctcgcaggagagttgttatagtcccgtctgtagagggcgagaaaccgttt
gagttttttgctgctaaaggtcgaatggcccttgttcaggacggggatgacgttaagcgc
ggcgatattcttgtagatggtaacccagcattgcaagatattttacgtatacaaggggtt
gagtctttgtctttgcaccttattaaagaaatacagaatgtatataggcttcagggcgtt
aagataaacgacaagcacatagaggtaataataaggcaaatgttaagaaaggttgagata
accgatcctggagattctgaacttcttgtgggcgaccagattgctcgcgacgagcttaaa
gaaatcaacaaacgtgttgagtctggtggtgggcgaccggcatcgtttatgccggtgctt
cagggtattacaaaggcgtctttgcatactaggtcgtttatttctgcagcgtctttccaa
gagaccaccagagttttaatagaagccgctgttcacgggaagcaagataaacttatagga
ttgaaagaaaacgttatagctggaaagcttatccccgctggtacggggtttgtcatgaga
gagatgaagaggaaagctgtttccagggacgttgttgtgcgcgcggcatcttcttctacg
gaaagcggggttgaaaaagattgcgaagatgcgtcggtccgcgaagcgtattag

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