Candidatus Hydrogenosomobacter endosymbioticus: HYD_6840
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Entry
HYD_6840 CDS
T07863
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
hec
Candidatus Hydrogenosomobacter endosymbioticus
Pathway
hec03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hec00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
HYD_6840 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hec03021
]
HYD_6840 (rpoC)
03400 DNA repair and recombination proteins [BR:
hec03400
]
HYD_6840 (rpoC)
Enzymes [BR:
hec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
HYD_6840 (rpoC)
Transcription machinery [BR:
hec03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
HYD_6840 (rpoC)
DNA repair and recombination proteins [BR:
hec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
HYD_6840 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Biotin_lipoyl
RnfC_N
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
BDB96551
LinkDB
All DBs
Position
776191..780384
Genome browser
AA seq
1397 aa
AA seq
DB search
MVSGEQRDSRFFGQDFSSKSFDSVKISIASPEQIRSWSFGEVKKPETINYRTFKPERDGL
FCSRIFGPVKDYECLCGKYKRMKYKGVICEKCGVEVTLAKVRRDRMGHIELASPVAHIWF
SKSPPSRMGIILDMSVKNIDRLLYFDGYVVLDPGLTGLEENQILTEDEYYRAQQEYGQES
FRASTGAEAVKEMLANLDLPSLRESLRQELSSSLPEMRKKKVMKRLKLIEAFISSGARPE
WMVLDVLPVMPPDLRPLVPLDGGRFATSDLNDLYRRIINRNNRLRRLIELRAPDMIIKNE
KRMLQEIVDAFFDNGRRGRPIVGSNKRPLKSMSDILKGKHGRFRMNLLGKRVDYSARSVI
TVGPNLKLHQCGLPKKIALELFKPFIYSKLESHGFAPTIKVARAMVERERPEVWDILEEV
VKDRLVLLNRAPTLHRLGIQAFEPILVEGKAIQLHPLVCLAFNADFDGDQMAVHVPLSLE
AQAEARVLMLSSNNILSPANGSPITLPTKDIVLGIYYLSIMREGEKGEGRAFSGLSEMIM
AHQEKTLSMHSKVVTRIDTYNDDGTVSGLQRVETTLGRMIVWDIIPKSNKIKFEKVNKLL
SSEDILELLGCVYSNCKKGDTVEFLDRLVQLGFRYATLSGVSIGQDDMIVPKEKWNIVAE
TRKIVDEFQNQYLDGLITQGERYNKVTDAWTNCADRVAKEMMDEISSDIPGKPLNSVFIM
ANSGARGSPAQMKQLSAMRGLIARHDGSILEHPIVSNLKEGLRAFEYFNGTHGARKGMSD
TALKTAGAGYLTRRLVDVAQDCVITELDCGTDNGVTIRPIVDSGEVVAPMADRVLGRICA
EDVVSPETGELIIARSSMIDIAAVEKLSLAGIESVKCRSVITCESAEGICSMCYGKDLAR
NKLVVVGESVGVIAAQSIGEPGTQLTLRTFHSGGAAQRAAESSFVDALVDGVVKFRNRQV
IKNGSGQTVVMNRHMEIIVCDSYGHESAVYRLVCGAHVFVSEGESVKAGQRLAEWDPYTI
PVIAECDGYVHYVDLVDGVSMKEIIDESSGIAKRTVSDWQKTGRGKGMQPRVVIRGKDGE
QLKLSNGADARYTLVPETVLMVDNGAWVHAGSVIARLSKETYKSRDIVGGLPRIAELFEA
RWPKDPAIMSECDGYVEYGKDYKSRRRVVIVPSVEGEKPFEFFAAKGRMALVQDGDDVKR
GDILVDGNPALQDILRIQGVESLSLHLIKEIQNVYRLQGVKINDKHIEVIIRQMLRKVEI
TDPGDSELLVGDQIARDELKEINKRVESGGGRPASFMPVLQGITKASLHTRSFISAASFQ
ETTRVLIEAAVHGKQDKLIGLKENVIAGKLIPAGTGFVMREMKRKAVSRDVVVRAASSST
ESGVEKDCEDASVREAY
NT seq
4194 nt
NT seq
+upstream
nt +downstream
nt
atggtgagcggtgaacagcgcgattcgcgattttttggtcaagacttttcttcgaaaagc
tttgatagcgtgaagatatccatagctagtcctgagcaaattcgctcttggtcgtttggt
gaagtgaaaaagccagagaccataaattaccgcacttttaagccagagagagacgggctt
ttttgctccagaatttttggacctgtaaaagattatgagtgcttatgcggtaagtataag
agaatgaaatataagggagtgatttgcgaaaaatgcggagtagaggttactcttgcgaag
gttcggcgcgacaggatgggacatatagagcttgcgtcgcccgttgcgcacatatggttt
tcaaaatctcctccgagcaggatgggcattatcttggatatgagcgtcaaaaacatagat
cgattgctgtatttcgatggatatgttgtgctcgatccaggtttgacagggctagaagag
aatcaaatcttgacggaggatgagtattacagagctcagcaggaatatggccaggagagt
tttagagcctcgactggagctgaggctgtgaaagaaatgcttgccaacttggatttgcct
tcacttcgtgaatctttaaggcaggagcttagctctagccttccggaaatgagaaagaaa
aaggtgatgaagaggcttaagcttatagaagcttttatatcgtcgggcgcgaggcctgag
tggatggtgttggacgttttgcctgtcatgcctccagatcttcgtcctttggttcctctc
gacggaggcagatttgctacgtctgatcttaacgacctctacagaagaattattaacaga
aataataggcttagacgtttgatagagttacgcgctccagatatgatcataaaaaatgaa
aagcgtatgcttcaggaaattgttgacgcatttttcgataatggtcgacgaggaaggcct
atagtgggcagcaataagcgtcctctgaagtcgatgtctgacatattaaaagggaagcat
ggtcgcttcagaatgaacttgcttggaaagcgcgtcgactattctgctcgttctgttatt
acagttggtccaaaccttaaacttcatcaatgcggtcttccgaagaagatagcgctggag
ctgtttaagcctttcatatattcgaagctagaatcacacggatttgctccgaccataaag
gttgcccgcgctatggtggagcgtgagcgtccagaggtgtgggatatacttgaagaagtc
gtgaaagataggctagtgcttttgaaccgcgccccaacccttcatagacttggaatccag
gcttttgagcctatacttgtggaaggaaaagcgatacagctgcatccgctcgtgtgtctt
gcgtttaacgcggacttcgatggagatcaaatggcagtccacgtcccgttgtctctcgag
gcgcaggcagaggcgcgcgtccttatgctttcttccaacaatatactgagcccggctaac
gggtctccgataacgcttcctacaaaggacattgttcttggaatatactacctttctata
atgagagaaggagaaaaaggcgaggggagagctttttctggtctaagcgaaatgataatg
gcgcatcaagaaaaaactctttcgatgcactcgaaggttgtcacaagaatcgatacatat
aacgacgatgggacagtgtctggattgcagagggtagagaccacgctcggcagaatgatt
gtatgggacataattcccaaaagcaataagattaagttcgaaaaagtgaacaagcttttg
tcgtcagaagatattctcgagcttcttggatgcgtgtatagcaactgtaaaaaaggtgat
actgtggagtttttggatcgccttgtacagcttggtttcagatacgcgacgctgtctggt
gtgtcgattggccaggacgacatgatcgtgccgaaagaaaagtggaatatagttgcagag
acaaggaagatagtagacgagtttcaaaaccaatatcttgacggtcttatcacgcaggga
gaaaggtacaacaaggttacagacgcttggactaattgcgcagatagggtcgcaaaggaa
atgatggatgaaatttctagcgatattccaggaaagcctttgaattccgtgtttataatg
gcaaattctggcgcgaggggatctcccgctcagatgaagcagctgtctgctatgcgcggt
cttatagctaggcatgatggaagtattttggaacaccctatcgtttctaacctgaaggaa
gggttgcgtgcttttgaatattttaacggtacccatggcgcaagaaagggtatgtcagac
accgcgcttaagactgctggagccggttatcttacgcgaaggctggttgatgtcgctcag
gactgcgtcataacggagcttgattgtggaacggataatggagttaccataaggcctatt
gttgatagcggagaagttgttgctcctatggcagacagagtattaggccgtatttgtgcc
gaagatgtggtttcgccagaaactggagagttaataattgctcggtctagtatgatagac
attgctgctgtggaaaagctgtctttggctggaatagaatctgtaaagtgtaggtctgtt
attacgtgcgaatctgcagagggtatttgctctatgtgttatggaaaagatttggcgaga
aataagcttgtggttgtgggagagtccgttggagttatcgctgctcagtccatcggagag
cccggtacacagctcacgcttcgaactttccactcaggtggagcggcgcaaagggcggca
gaatcctcgttcgttgatgctctagttgatggcgttgtcaagtttagaaacaggcaagtg
ataaaaaatggctcaggacaaaccgttgttatgaatcgccatatggaaattattgtgtgc
gattcttatggacatgagagcgctgtgtataggcttgtgtgtggagcgcatgtgtttgtt
tctgagggagagagcgtgaaggctggccagagactagcagagtgggacccatataccata
cctgtgatagcagagtgtgacggttatgtgcactacgtggatcttgttgatggtgtgtcc
atgaaagaaataatagacgagtcatcaggaatagcgaagcgcacggttagcgattggcaa
aagactggtagaggcaagggtatgcagcctagggttgtgatacgcggaaaagatggcgaa
cagcttaagctttctaatggtgcagatgcgcggtatacgttggtaccagaaacagttctt
atggtagacaacggtgcatgggtccatgcaggaagtgtgatagccaggttgtcgaaagaa
acatataagtctcgagatatcgttggaggtttgcctagaatagccgaactgtttgaggct
agatggcctaaagatcctgctattatgagtgaatgtgatggttatgtggagtatggtaaa
gattacaaatctcgcaggagagttgttatagtcccgtctgtagagggcgagaaaccgttt
gagttttttgctgctaaaggtcgaatggcccttgttcaggacggggatgacgttaagcgc
ggcgatattcttgtagatggtaacccagcattgcaagatattttacgtatacaaggggtt
gagtctttgtctttgcaccttattaaagaaatacagaatgtatataggcttcagggcgtt
aagataaacgacaagcacatagaggtaataataaggcaaatgttaagaaaggttgagata
accgatcctggagattctgaacttcttgtgggcgaccagattgctcgcgacgagcttaaa
gaaatcaacaaacgtgttgagtctggtggtgggcgaccggcatcgtttatgccggtgctt
cagggtattacaaaggcgtctttgcatactaggtcgtttatttctgcagcgtctttccaa
gagaccaccagagttttaatagaagccgctgttcacgggaagcaagataaacttatagga
ttgaaagaaaacgttatagctggaaagcttatccccgctggtacggggtttgtcatgaga
gagatgaagaggaaagctgtttccagggacgttgttgtgcgcgcggcatcttcttctacg
gaaagcggggttgaaaaagattgcgaagatgcgtcggtccgcgaagcgtattag
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