Candidatus Hoaglandella endobia: TPER_HE00035
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Entry
TPER_HE00035 CDS
T04484
Symbol
topA
Name
(GenBank) DNA topoisomerase 1
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
hed
Candidatus Hoaglandella endobia
Brite
KEGG Orthology (KO) [BR:
hed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hed03032
]
TPER_HE00035 (topA)
03400 DNA repair and recombination proteins [BR:
hed03400
]
TPER_HE00035 (topA)
Enzymes [BR:
hed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
TPER_HE00035 (topA)
DNA replication proteins [BR:
hed03032
]
Prokaryotic type
DNA Topoisomerases
TPER_HE00035 (topA)
DNA repair and recombination proteins [BR:
hed03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
TPER_HE00035 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
DUF2399
Toprim_4
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
CUX96988
UniProt:
A0A143WTE4
LinkDB
All DBs
Position
I:complement(26182..28770)
Genome browser
AA seq
862 aa
AA seq
DB search
MGKVLVIVESPAKAKTINKYLGNDYVVKSSIGHIRDLPTSGSASQKNIEANKKKKNKADP
QSALVNSMGIDPYHGWKAQYQILPGKEKVVTELKALAEKASHIYLATDFDREGEAIAWHL
REVIGGNNKRFSRVVFNEITRNAIIQAFDKPGELNINRVHAQQTRRFMDRLVGYMVSPLL
WEKIARGLSAGRVQSVAVRLVVEREREIKAFIPKEYWKLHANLITSHASTLAMQVTHQKG
KLFQPVHQQQIQAAISLLEKANFVVSNNEKKPISSKPSAPFTTATLQQAASNYLGYDIKK
TMILAQSLYEMGHITYMRTNSTNLSQDALNMVRCYIIDTFGNKYLPKQANKYVSKDNTQE
AHEAIRPSDVHVLAEQLNDTRPEAQKIYHLIWRQFIACQMTPARYDDTTLSVTAGEFQLR
TRCRALRFDGWTIIMPALHKVEDRILPAIKIGQTLILEKLLPSQHFTKPLARYSESSLVK
ELEKRKIGRPSTYVSIISNIQDRGYVHVENCRFYADKMGEIVTDCLEENFHELMNYDFTA
KMEDKLDQVAASEQEWKSVLDTFFEKFSQQLEKAKKDPQDGGMGNNKMVMIRIDCPVCSR
KMGIRTASTGVFLGCSGYILPPKERCKNSINLIPEVETINLLDGDDAETNALRARRRCAK
CHTAMDSYLIVDSQSKLYVCGNNPLCEGYEIEQGQFCIKGYDGTIVECEKCGSDMHLKLG
RFGKYMACTNEVCNNTRKILRHGDVAPPKEDPVPLPELHCERSDAYFVLRNGASGVFLAA
NTFPKSRETRAPLVAELARFRERLPEKLHYLADAPAQDEAGNSTLVRFSRKTKQQYIASE
KNGKATGWTLFYLDGQWQLSKK
NT seq
2589 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagttctcgttatcgttgaatcgccggccaaagccaaaacgattaataaatat
ttaggaaatgactacgtagttaagtctagtatcggtcacatacgcgatttaccgactagc
ggttcagctagccaaaagaacattgaagcaaataaaaagaaaaaaaataaagcagatccg
caaagtgcgctagtcaacagtatgggcattgacccttatcatggctggaaagcgcagtat
caaatcctgcccggtaaggagaaagtggtaaccgagttaaaagcgctggcagaaaaagcc
agccatatttatcttgctaccgactttgatcgtgaaggtgaagcaatagcttggcatcta
cgcgaagtgatcggcggtaataataaacgttttagccgagtagtatttaatgaaattacc
cgcaatgcgattatacaagcttttgacaaaccaggcgaattgaatattaatcgggttcat
gcccagcagacgagaaggtttatggaccgtttggtaggttatatggtatctccattatta
tgggaaaaaatagcccgcggtttatcggctggtagagtacaatcggtggcggtacggtta
gtggtggagcgtgagcgggaaatcaaggcgttcatacctaaggagtattggaaactgcat
gctaatttaattacttcgcacgcttcgacgttagcgatgcaggtaactcatcagaaggga
aaactgtttcagcccgttcatcagcagcaaatccaggcggcgatatcgttgctagaaaag
gcaaatttcgtggtcagcaataacgaaaagaagccaatcagcagtaaacctagtgctcct
tttactactgcaacgctacagcaggcggccagtaactacttgggttatgacataaaaaaa
actatgatactggcacaaagtttgtacgagatgggccatatcacctatatgcgtactaat
tcaactaatctaagtcaagatgcgcttaatatggttcgatgctatataatcgatactttt
ggtaataaatatctacctaaacaagccaacaagtacgtcagtaaagataatactcaggaa
gctcatgaggctatccgtccctccgatgttcatgttctagcagaacagttaaatgataca
aggcctgaagcgcaaaaaatttaccatttaatatggcgccaatttatagcgtgtcaaatg
actccagcacgctatgacgacaccacactgagcgttaccgccggagaatttcagttgcgt
actcgctgtagggccttgcgttttgatggctggaccataattatgcctgcgctgcataaa
gtagaagaccgtattttgccagcaattaagataggccagacgcttatattagaaaaattg
cttcctagtcagcattttactaaaccgctagcacgctatagtgagtcttccttggtcaaa
gagctagagaaacgcaaaatagggcggccatcgacctatgtatcgataatttctaatatt
caggatcgcggctatgttcacgtggagaactgccgtttttatgccgataaaatgggtgag
attgtaacagattgcttggaggagaatttccacgagctgatgaattatgattttactgca
aaaatggaagataagcttgatcaagttgctgctagtgagcaagaatggaaaagtgtatta
gataccttctttgaaaaattcagccaacagttagaaaaagctaaaaaggatcctcaagat
ggaggtatggggaataataagatggtaatgatccgcatcgattgtccggtctgtagccgg
aaaatggggattcgtacagctagcaccggggtatttttaggatgttccggctatatttta
ccgcctaaagagcgttgtaaaaattctattaacttgattccggaagtagaaacaatcaac
ctgcttgatggagatgatgctgaaactaatgcactacgcgctcgccgccgctgcgctaag
tgccacacggcaatggacagttatcttattgttgatagccagagcaaactgtacgtttgc
gggaataatccgttgtgcgaaggctatgaaatcgagcagggtcaattttgtattaaaggc
tacgacggaacgattgtagaatgtgaaaaatgcggatcagatatgcatctaaaactgggg
cgtttcggtaaatatatggcctgtaccaatgaagtatgtaataatacccgcaagatctta
cgccacggcgatgtagcgccgccaaaagaagacccggtaccgctgcccgagcttcactgc
gagagatcagacgcttattttgtactacgtaacggcgcgtcgggagtatttctagccgcc
aatacctttcctaaatctcgtgaaacccgtgcaccactggtcgcagaactagccaggttc
cgcgaacgcttgccggagaagctgcactatctagccgatgcacctgcccaggacgaggca
ggtaatagtaccctggtgcgctttagccgcaaaactaagcaacaatacattgcatctgaa
aagaatggtaaggccaccggctggaccttgttttatctcgatggccaatggcagttgagc
aagaaataa
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