Candidatus Hoaglandella endobia: TPER_HE00088
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Entry
TPER_HE00088 CDS
T04484
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
hed
Candidatus Hoaglandella endobia
Brite
KEGG Orthology (KO) [BR:
hed00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
hed03016
]
TPER_HE00088 (truB)
Enzymes [BR:
hed01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
TPER_HE00088 (truB)
Transfer RNA biogenesis [BR:
hed03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
TPER_HE00088 (truB)
Prokaryotic type
TPER_HE00088 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
CUX97038
UniProt:
A0A143WTJ7
LinkDB
All DBs
Position
I:complement(86015..86941)
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AA seq
308 aa
AA seq
DB search
MSRPSHRGRDIDGILLLDKPIGLSSNYLLKTIKWLFRAKKAGYTGTLDPLATGMLPICLG
EATKFSQYLLDADKRYRVTTRLGERTDTSDAEGKIVSVRPVVLDKARLVMSLEAFRGAFF
QVPSMFSALKYQGRPLYEYARQGIEIAREARPIEIYSLQLLHWNLTQLVLEIHCSKGTYI
RTIIDDLGERLGCGAHVQVLRRLTVARYSTARMITLDALLAIDTNMPETQVQLDALLLSI
DSAVADMPAVHLPPDIAARVQLGQKVAITTPLEAGLVRLTEGQFRHFLGIGEITIPGFLT
PLRLIAKP
NT seq
927 nt
NT seq
+upstream
nt +downstream
nt
atgagccgtcctagccaccgtggtcgcgatattgacggtattctgttgctggataaacct
attggactgtcctccaactatttgctgaagacaattaaatggctctttcgtgcaaagaaa
gcaggctatactggtacactggatccactagcaactgggatgcttcctatttgtctcggc
gaggcgactaaattttctcagtatttgctggatgcagataaacgctatcgtgtgaccacg
cgacttggcgaacgtactgatacgtctgacgcagagggcaagatagttagcgtccgtcca
gttgtcctagataaggcacggctggtaatgtcactggaagcttttcgcggggcattcttt
caggtgccatcgatgttttctgcgcttaaatatcaaggcagaccactttatgaatatgcg
cgacaaggtattgagatagcacgagaggcgagacctatcgagatctacagtctgcagctg
ctgcactggaacctgacccagttagtattggagatacattgttccaaaggcacctatatt
cgcactattatcgacgatttaggggagcgactaggctgcggtgcacacgtccaagtgcta
cgtcggctgacagtggcacgctattctaccgcacgcatgatcactttagacgcgcttttg
gctatcgatactaatatgcctgaaactcaggtgcagctagatgcgctgttgttatcaata
gatagcgcggtggcggacatgccagcagtacatcttccgccagacatcgctgcgcgagta
cagcttggacaaaaggtagcaattacaacgccattagaagcaggattggtgcgtttgaca
gaaggtcagttccgtcactttttgggcatcggtgaaattactatacctggatttttaacg
ccgctgcgcctgatagcgaagccataa
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