Candidatus Hoaglandella endobia: TPER_HE00467
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Entry
TPER_HE00467 CDS
T04484
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
hed
Candidatus Hoaglandella endobia
Pathway
hed03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
hed00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
TPER_HE00467 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hed03021
]
TPER_HE00467 (rpoB)
03400 DNA repair and recombination proteins [BR:
hed03400
]
TPER_HE00467 (rpoB)
Enzymes [BR:
hed01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
TPER_HE00467 (rpoB)
Transcription machinery [BR:
hed03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
TPER_HE00467 (rpoB)
DNA repair and recombination proteins [BR:
hed03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
TPER_HE00467 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
CENP-Q
Motif
Other DBs
NCBI-ProteinID:
CUX97377
UniProt:
A0A143WUF0
LinkDB
All DBs
Position
I:500466..504500
Genome browser
AA seq
1344 aa
AA seq
DB search
MVYSYTEKKRIRKDFGKLPQVLDIPYLLSIQLDSFKKFIEQDHEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVKECQIRGMTYSAPLRVKLRLIIYEREAPEGTVKNIKEQ
EVYMGEIPLMTENGTFIINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFFRIDRRRKLPATIILRALNYDTYQILDLFFDKIIYEIHAKTWQMR
LVPERLRGETASFDIKSNSTDTVYVEKGRRITANHIRQLEKDGITQIEVPVEYLIGKVVI
KDYLNESTGEIIISANMELTLDLISKLNQAGHKSIETLFTNELDHGAYISETLLVDPTSD
RLSALVEIYRMMRPGEPPTREAAEQLFENLFFSEERYDLSAVGRMKFNRSLLRETIEGLS
ILSKEDIIDVIKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRIGLVRVERAVKER
LSLGDLDSLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGL
TRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRSVQNGV
VTDEIHYLSAIEEGNFVIAQANTKLSEDGRFVDDLVTCRSKGESSLFNRDQVDYMDVSTQ
QVVSVGASLIPFLEHDDANRALMGANMQRQAVPPLRTDKPLVGTGMERAVAVDSGVTSVA
KRGGTVQYVDASRIVINVNLDEMYPGEAGIDIYNLTKYIRSNQNTCINQTPCISLGEPVE
RGDVLADGPSTDLGELALGQNMRIAFMPWNGYNFEDSMLVSERVVQEDRFTTIHIQELAC
FSRDTKLGPEEITADIPNVGEVALSKLDESGIVYIGAEVTGGDILVGKVTPKSETQLTPE
EKLLRAIFGEKASDTKDSSLRVPNGVSGTVIDVQVFTRDGIEKDKRALEIEEMQLKKAKK
DLTEELQIFEAGLFARIHDLLVSGGIETEKLDNLIRERWFELSLADKAKQNQFEQLTRQY
EELKREFEKKLEAKRHKITQGDDLAPGVLKIVKIYLAVKRQIQPGDKIAGRHGNKGVVSK
INPIEDMPYDENGVPVDIVLNPLGVPSRMNIGQILETHLGMATKGIGDKINKMLKQHEKV
DKLREFIQKAYNLGDNVRQKVDLNTFSDEEILRLAENLKKGMPIATPVFDGAKEKEIKAL
LQLGGLPTSGQITLFDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQP
LGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDSHHLMEPG
MPESFNVLLKEISSLGINIELEED
NT seq
4035 nt
NT seq
+upstream
nt +downstream
nt
atggtttactcctataccgaaaaaaaacgtattcgtaaggacttcggaaaacttccgcag
gttttagacattccctaccttctttctatccagcttgattctttcaaaaagttcatcgag
caagatcatgaaggtcagtacggtctggaagcagctttccgatccgtatttcctatacaa
agctacagcggcaactctgaattgcagtatgtcagttaccgtttaggtgaacctgtgttt
gatgttaaagaatgccaaatccgaggtatgacttattctgccccactgcgtgtcaagcta
cgtcttattatttatgagcgcgaagcgcctgaagggacagtgaaaaacattaaagagcag
gaagtttacatgggcgaaattcctctcatgaccgagaatggcacatttattatcaacggt
actgaacgtgttatcgtttcccagttacaccgcagccccggtgtattctttgatagcgac
aaaggtaaaactcactcttctggtaaagtattatataacgcgcgtattattccttaccgc
ggttcttggctggattttgaatttgacccgaaagataatttgtttttccgtattgaccga
cgtcgtaaattaccggcaactattattttacgcgcgctgaactatgacacttaccagatt
ttagatctgtttttcgataaaattatttacgaaattcatgctaaaacatggcaaatgagg
ctggttcctgagcgtttacgcggtgaaaccgcctcgtttgatattaagtcaaacagtact
gatactgtttatgttgaaaaaggccgccgtattacggcaaaccatatacgtcagcttgaa
aaagacggtataacacagattgaagttccagttgaatatcttattggtaaagtggtcata
aaagattacttaaatgaaagcactggtgaaattattatttccgcaaatatggaactaaca
ctggatctaatatctaaactgaaccaggctggacataaaagtatagaaacattgtttact
aatgagttagaccacggcgcttatatatcagagacgcttctagttgaccccactagtgac
cggttgagtgcacttgtagaaatctaccgtatgatgcgacccggcgagccgccgacccgt
gaagcggctgagcaactgtttgaaaatctatttttttcagaggaacgttacgatttatct
gcggtaggccggatgaaatttaatcgttcgctgctacgcgaaacaattgaaggtttaagt
attctcagcaaagaggatattattgacgtgataaaaaaacttattgatattcgtaacggt
aaaggcgaagttgatgatatcgatcaccttggcaatcgtcgtattcgttcggtaggagaa
atggcagaaaatcagttccgcattggtctagtgcgtgtagaacgtgcggtaaaggagcgt
ctatctttaggcgatttagatagtctaatgccacaggatatgattaatgccaagccaatt
tcagctgcagtaaaagagttcttcggttccagccagttgtcgcaatttatggatcagaat
aacccgctatctgaaattactcataagcgccgtatatcagcccttggccctggcggttta
acccgtgagcgggcgggttttgaagtgcgtgatgtgcatcctacccattacggacgcgtc
tgccccatcgagaccccagaaggaccaaatatcggccttattaactcactgtctgtttat
gcacagactaatgaatatggtttcttggaaactccgtaccggagcgtgcagaacggtgtg
gttaccgatgaaattcattatctctctgctattgaagaaggtaatttcgtaatcgcgcag
gctaatacaaaacttagtgaagacggccgtttcgtagacgatttggtcacctgtcgcagc
aaaggtgaatcaagtctatttaatcgcgatcaggtcgattatatggacgtttccactcag
caagtagtttcggtaggcgcttctttgattccctttttggagcacgatgatgctaatcgc
gccttaatgggggcaaatatgcagcgccaggcggtgcctcccctgcgcacagataaacca
cttgttggcactggtatggagcgcgctgtagcagtagattctggtgttacatccgtggca
aaacgcggtggtaccgtacagtacgtagatgcttcacgtattgtaattaatgtcaattta
gatgaaatgtatccgggcgaagcaggtattgatatttataatttaacgaaatatattcgt
tctaaccaaaatacttgtatcaaccagacgccctgtatatcgttgggtgaaccagttgag
cgcggtgacgtactggctgatggcccgtctaccgatttaggtgagctagcactaggtcag
aatatgcgtatcgcgttcatgccgtggaatggctacaacttcgaagattctatgctcgtt
tccgaacgcgtagtgcaagaagatcgttttactaccatccatattcaggaactagcgtgc
ttttcccgcgatactaaactaggtcccgaagaaattactgctgacattccaaatgttggg
gaagtagcgctatcaaaactagatgagtcaggcattgtatatattggcgcagaagttaca
ggcggcgatattttagttggcaaagtaacgccgaaaagcgaaacacaattaacaccagaa
gaaaaactattgcgtgctatcttcggtgaaaaagcctctgatactaaggattcatcgctg
cgtgttcctaacggagtttccggtacagtgatcgatgtccaggtgtttacccgtgatgga
atagaaaaagataaacgtgcactagaaattgaagaaatgcagcttaaaaaggctaagaaa
gatctgactgaagaattgcaaatttttgaagctggtctgtttgctcgtattcatgatttg
ttggtttccggtggtatcgagacagagaagctagacaatctaatccgtgaacgctggttc
gaactaagcctggcagataaagctaaacagaatcaatttgaacagcttaccagacagtac
gaagagctaaagcgagaatttgagaagaagcttgaagctaagcgccataaaattacccaa
ggagatgatttagcaccgggcgtactaaaaattgtaaagatatatctagcagtaaaacgt
cagatacagccaggcgataagatagctggacgtcatgggaacaagggtgttgtctccaag
atcaacccgattgaagatatgccttacgatgagaatggcgtcccggtagatatcgtgctg
aatccgcttggcgtaccgtcgcgtatgaatatcggccagatactggaaactcatttaggt
atggcgactaaaggcatcggtgataaaatcaataaaatgctcaagcagcacgaaaaagta
gataagctacgcgagtttatccagaaggcttataatcttggtgacaacgtacgtcaaaaa
gtggatctcaataccttctccgatgaggaaatactacgtctagccgaaaatctgaagaag
ggcatgccaattgctactccggttttcgatggcgccaaagagaaagagattaaggctttg
ctgcagctgggcgggttgcctacgtccggtcagattaccttgtttgatggtcgcactggt
gagcaatttgagcgtcaggttactgtagggtatatgtacatgttaaagttaaatcattta
gtagacgataaaatgcatgctcgttctactggctcatacagtctagtgacccagcagcct
ctaggtggaaaagcgcaatttggcggccagcgctttggggaaatggaagtatgggcgcta
gaagcctatggtgctgcttacactctgcaggaaatgcttaccgttaagtcagatgatgtt
aacggtcgtaccaagatgtataaaaatattgtggatagccatcacctgatggaaccaggg
atgccagaatccttcaatgtcttattaaaagaaatcagttcgctaggaatcaacatcgag
cttgaagaagactaa
DBGET
integrated database retrieval system
