Herbaspirillum sp. meg3: hmeg3_00650
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Entry
hmeg3_00650 CDS
T05024
Symbol
xth
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
hee
Herbaspirillum sp. meg3
Pathway
hee03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
hee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
hmeg3_00650 (xth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hee03400
]
hmeg3_00650 (xth)
Enzymes [BR:
hee01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
hmeg3_00650 (xth)
DNA repair and recombination proteins [BR:
hee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
hmeg3_00650 (xth)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
DUF5648
Motif
Other DBs
NCBI-ProteinID:
ASU41175
LinkDB
All DBs
Position
complement(137577..138353)
Genome browser
AA seq
258 aa
AA seq
DB search
MPKIVSANLNGIRSAAKKGFFEWMAKESADFICVQELKAQEADMTEDFLTPKGYVGHFHY
AEKKGYSGVGLYSKRKPDAVRIGFGTKEFDDEGRYVECDFGDITVISLYCPSGSSSEERQ
QAKFRFMEVFLPHLQELKDSGREIVICGDWNIAHKEIDLKNWKSNQKNSGFLPEERAWLT
RVFDELGLVDVYRTIHPETTGDAYTWWSNRGQAWANNVGWRIDYHIATAGIAKKAKTAAI
YKEERFSDHAPLTIDYKG
NT seq
777 nt
NT seq
+upstream
nt +downstream
nt
atgccaaaaatcgtctccgccaatctcaacggcatccgctccgccgccaaaaagggtttc
ttcgagtggatggccaaggaatccgccgacttcatctgcgtgcaagagctcaaggcgcag
gaagccgacatgacagaagattttctgacgccgaagggttatgtcggccattttcactac
gcggagaagaagggttactccggtgtcggcctgtacagcaaacgcaaacctgacgctgtg
cgtatcggttttggcaccaaggagttcgacgatgaaggccgctatgtcgagtgcgacttc
ggcgacatcacggtgatctcgctgtattgcccgtctggttcgtcgagcgaagaacgccag
caggcgaagtttcgcttcatggaagtgttcttgccgcacttgcaggagttgaaggacagc
ggccgcgagatcgtcatctgcggtgactggaacatcgcgcacaaagagatcgacctcaag
aactggaagagcaaccagaagaactcgggcttcctgccggaagaacgcgcctggctgaca
cgcgtgttcgatgagctgggcctggtggacgtgtaccgcaccatccatcctgaaaccacc
ggcgacgcctacacctggtggagcaatcgcggccaggcctgggccaacaacgtgggttgg
cgcatcgactatcacatcgcgactgccggtatcgccaagaaggcgaagacggctgcgatc
tacaaggaagaacgcttctcggatcatgcaccgctgacgattgattacaagggctga
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