Herbaspirillum sp. meg3: hmeg3_01980
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Entry
hmeg3_01980 CDS
T05024
Symbol
rfbB
Name
(GenBank) dTDP-glucose 4,6-dehydratase
KO
K01710
dTDP-glucose 4,6-dehydratase [EC:
4.2.1.46
]
Organism
hee
Herbaspirillum sp. meg3
Pathway
hee00521
Streptomycin biosynthesis
hee00523
Polyketide sugar unit biosynthesis
hee00525
Acarbose and validamycin biosynthesis
hee00541
Biosynthesis of various nucleotide sugars
hee01100
Metabolic pathways
hee01110
Biosynthesis of secondary metabolites
hee01250
Biosynthesis of nucleotide sugars
Module
hee_M00793
dTDP-L-rhamnose biosynthesis, glucose-1P => dTDP-L-Rha
Brite
KEGG Orthology (KO) [BR:
hee00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
hmeg3_01980 (rfbB)
09109 Metabolism of terpenoids and polyketides
00523 Polyketide sugar unit biosynthesis
hmeg3_01980 (rfbB)
01055 Biosynthesis of vancomycin group antibiotics
hmeg3_01980 (rfbB)
09110 Biosynthesis of other secondary metabolites
00521 Streptomycin biosynthesis
hmeg3_01980 (rfbB)
00525 Acarbose and validamycin biosynthesis
hmeg3_01980 (rfbB)
Enzymes [BR:
hee01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.46 dTDP-glucose 4,6-dehydratase
hmeg3_01980 (rfbB)
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Motif
Pfam:
GDP_Man_Dehyd
Epimerase
RmlD_sub_bind
Polysacc_synt_2
3Beta_HSD
NAD_binding_4
adh_short
Phage_g100
NAD_binding_10
KR
Motif
Other DBs
NCBI-ProteinID:
ASU37183
UniProt:
A0A223P4X8
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All DBs
Position
complement(432867..433934)
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AA seq
355 aa
AA seq
DB search
MIFVTGGAGFIGSNFILDFLASQDEHVLNIDKLTYAGNPYNLTSLDGDERYHFVQADIAD
REKIAQLFEQHQPRAIIHFAAESHVDRSIHSPGEFIHTNVNGTFSLLEAARAYWSGLEPK
RKTAFRFLHVSTDEVYGTLGPNDPPFSETTPYAPNSPYSASKAASDHLVRAYHHTYGLPT
LTTNCSNNYGPYHFPEKLIPLVILNALDGKSLPIYGDGQQIRDWLFVSDHCAAIRQVLAR
GRVGETYNIGGWNEKTNLDVVYTLCDILDQQKPKATGSYRDQITFVQDRPGHDRRYAIDA
RKLERELGWKPAETFETGIAQTVRWYLDHPHWVANIRTGGYLKWLELHYGTTEEE
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atgatatttgtcacaggcggcgccggtttcatcggcagcaatttcattctggacttcctg
gcgagccaggatgagcacgtcctcaatatcgacaagctgacttacgccggcaacccgtac
aatctgaccagcctcgacggcgacgaacgctaccacttcgtacaggccgatattgccgat
cgcgaaaaaatcgcgcagctgtttgaacaacaccaaccgcgcgcgatcatccacttcgcc
gccgaaagtcacgttgatcgctccattcacagtcccggcgaattcattcacacgaacgtc
aacggcaccttcagtctgctggaggctgcgcgtgcttattggtcgggtctggagccaaaa
agaaaaacggcattccgcttcctgcacgtgtcgaccgatgaagtctatggcacccttggg
ccaaacgatcctcccttcagtgaaactacgccttacgcaccgaacagcccttattccgct
tccaaggctgcgtcggaccatctggtgcgcgcttatcatcacacctacggtctgccgacg
ctgaccaccaattgctccaacaattacggcccgtatcacttccctgagaagttgatccca
ttggtcatcctcaacgcacttgacggcaagtcactgcccatctatggcgatggtcagcaa
atccgtgactggctattcgtcagcgatcattgcgctgcgatacgccaggtactggcacgc
ggcagggtcggcgaaacgtataacatcggcggctggaacgaaaaaaccaacctcgacgtg
gtgtacacgctgtgcgacattctcgatcagcaaaaaccaaaagcaaccggtagctatcgc
gaccagatcaccttcgtgcaagatcgtccggggcatgatcgccgctatgccattgatgcc
cgcaagctggagcgtgaactcggatggaaacccgcggagacctttgaaaccggtatcgcc
caaactgtacgctggtatctcgatcacccgcattgggtcgccaacatccgtaccggcggt
tatctgaaatggctggagctgcactacggcaccacggaggaagaatga
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