Herbaspirillum sp. meg3: hmeg3_05445
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Entry
hmeg3_05445 CDS
T05024
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
hee
Herbaspirillum sp. meg3
Pathway
hee03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
hee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
hmeg3_05445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hee03400
]
hmeg3_05445
Enzymes [BR:
hee01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
hmeg3_05445
DNA repair and recombination proteins [BR:
hee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
hmeg3_05445
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
hmeg3_05445
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
hmeg3_05445
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ExoI_SH3
ExoI_C
RNase_T
DUF7365
DUF7540
Motif
Other DBs
NCBI-ProteinID:
ASU37793
LinkDB
All DBs
Position
complement(1192876..1194312)
Genome browser
AA seq
478 aa
AA seq
DB search
MSNHTFLWHDYETFGAQARRDRPAQFAAIRTDAELNEIGEPIMIYCKPAPDFVPDPQSCL
ITHITPQDCLERGIPEYQFAAQIEQAMSEPGTIGVGYNTIRFDDEITRFMFWRNLIDPYA
REWQNNCGRWDLLDVVRTTYALRPDGIQWPKKEDGVTPSFKLEHLTRENGILHEAAHDAL
SDVRATIAFARLIKDKQPRLFDFCLALHKKERVATELALATPKPFLHVSGMFPATQGCIA
VMWPLATHPTNKNEVIAWDLSRDPTELAGLDAETIRTRMFSKTEDLPEGVSRLPVKTIHL
NKSPMVIASLKTLTAERAAELGVDVDAALQNAASAAALPEMHAVWAKVFQRPKEAPADVD
EDLYGGFVGNNDRRQLTQLRALSPQQLAQARITFDDARLEELLFRYRARNFPETLSEEEA
QRWEEHRAARLFEGEGGARTLDALFEQIDQLSESVDERGEEILGALYDYAEMIAPERM
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgtccaatcacactttcctctggcacgactacgaaaccttcggcgcacaagcgcgtcgc
gatcgcccggcgcagttcgccgcgatccgcaccgatgccgagctcaacgagatcggcgag
ccgatcatgatctattgcaaaccggcacccgatttcgtccccgatccgcagtcttgcctg
atcacgcacatcacgccgcaagactgtcttgagcgcggcattcccgaataccagttcgct
gcgcaaatcgaacaagccatgtccgaacccggcaccatcggcgtcggctacaacaccatc
cgctttgatgatgaaatcacgcgcttcatgttctggcgcaacctgatcgatccgtatgct
cgcgaatggcaaaacaattgcggccgctgggacttgctggacgtagtgcgcaccacctac
gccctgcgccccgacggcatccaatggccgaagaaagaagacggcgtcacgcccagcttc
aagctcgaacatttgaccagggaaaacggcatcctccacgaagcggctcatgatgccttg
tccgacgtgcgtgcgaccatcgccttcgcgcgcctgatcaaagacaaacagcctcgcctg
ttcgacttctgtctcgccctgcacaagaaagaacgcgtcgccaccgaactcgcactggca
acgcccaaaccgtttttgcacgtgtcaggcatgttccccgcgacgcaaggttgcatcgcc
gtgatgtggccgctggccacccacccgaccaacaaaaatgaagtgatcgcctgggatctg
agccgcgacccgaccgaactcgccggacttgatgcagagacaatccgcacacgcatgttc
agcaaaaccgaagacctgccggaaggggtgtcacgcttgccggtcaagaccatccatctg
aacaaatcgccgatggtgatcgccagcctcaaaacgctgaccgcagaacgtgccgccgaa
ctcggtgtcgacgtcgacgccgctttgcagaatgcggcaagcgcggccgccttgccggaa
atgcatgcggtctgggccaaggtatttcagcgtcccaaggaagcaccggcggacgtggat
gaagacttgtacggcggcttcgtcggcaacaatgaccgccgccaactcacgcaattgcgc
gcgctgtcgccgcaacaactggcacaggcgcgcatcacgtttgacgacgccagattggaa
gaactgctgttccgttatcgcgcgcgcaatttccctgaaactttgtcggaagaagaagcg
caacgatgggaagaacatcgcgccgcacggctgttcgaaggcgaaggcggtgcccgcacg
ctggacgcactgttcgagcaaatcgaccagttgtccgaaagcgtggatgaacgcggcgaa
gagatcctcggcgccttgtatgactatgctgaaatgatcgcgccggaacgcatgtaa
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