Herbaspirillum sp. meg3: hmeg3_08055
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Entry
hmeg3_08055 CDS
T05024
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
hee
Herbaspirillum sp. meg3
Pathway
hee03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hee00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
hmeg3_08055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hee03400
]
hmeg3_08055
DNA repair and recombination proteins [BR:
hee03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
hmeg3_08055
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
hmeg3_08055
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
Kinesin
AAA_30
Microtub_bd
Motif
Other DBs
NCBI-ProteinID:
ASU38251
LinkDB
All DBs
Position
complement(1779188..1781281)
Genome browser
AA seq
697 aa
AA seq
DB search
MADLSPLSTVAPTHDEGKFLTFPGSPYRLYQPFPPAGDQPAAIDKLVEGVNDGLFFQTLL
GVTGSGKTYTMANTIARLGRPAIIFAPNKTLAAQLYSEFREFFPQNAVEYFVSYYDYYQP
EAYVPQRDLFIEKDSSINEHIEQMRLSCTKSLMERRDVVIVATVSAIYGIGNPNEYHQMI
LTLRAKDKVSQRDVIARLIQMQYSRNEVDFGRGTFRVRGDTIDVFPAEHAELAVRIEMFD
DEIDSLQLFDPLTGRVRQKIPRFTVYPGSHYVTPRATVLRAIETIKDELRERLEFFRKEN
KLIEEQRLEQRTRFDIEMMTEIGFTKGIENYSRHLSGAKAGEPPPTLVDYLPQDAIMFLD
ESHVLIGQLNGMYNGDRARKTNLVDYGFRLPSALDNRPLKFDEFQSKLRQTVFVSATPAD
FENTHADQVVEQVVRPTGLVDPLIQVRPATTQVDDLMQEITIRVKKNERVLVTTLTKRMA
EQLTEFLSDNGIKVRYLHSDIDTVERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVA
ILDADKEGFLRSERSLIQTIGRAARNLNGMAILYGDKVTDSMHRAIGETERRRAKQVAFN
EANGITPMGIKKEIRELIDGVYSPQEARVELMVAQEQANYEAMSEKQVSKEIKRLEKLML
DHAKNLEFEKAAKVRDQLHQLKQQLFGAAGDDNIAVA
NT seq
2094 nt
NT seq
+upstream
nt +downstream
nt
atggctgatttatcccccttaagtaccgttgcccctactcacgacgagggtaagttcctg
actttcccgggttcgccgtaccgcctgtaccagcccttcccgcctgccggcgatcagcct
gcagcaatcgacaagctggtcgagggcgtcaacgacggcctgttcttccagaccttgctg
ggcgtcacaggttcgggcaagacctacacgatggccaacaccatcgcccgcctcggccgg
cctgcgatcatcttcgccccgaacaaaacgctggcggcgcagttatatagcgaatttcgt
gagttctttccgcagaacgcggtcgaatatttcgtcagctactacgattattaccagccg
gaagcctacgtgccgcagcgcgacttgttcatcgagaaagattcctcgatcaacgagcat
attgaacagatgcgcctgtcctgcaccaaatcgctcatggaacgccgcgacgttgtgatt
gtggcaactgtttccgcgatctacggtatcggtaatccgaatgaataccatcagatgatc
ctgaccttgcgcgccaaggacaaggtcagccagcgcgacgtcatcgcccgcctgatccag
atgcaatactcgcgcaacgaagtcgacttcggccgtggcacattccgcgtgcgcggcgac
accatcgacgtgttcccggcggaacatgccgaactggcggtgcgtatcgaaatgttcgac
gacgaaatcgacagtctgcaattgttcgacccgctgaccggccgtgtgcgccagaagatt
ccgcgcttcaccgtctatcccggttcgcactacgtcacgccgcgcgccactgtgctgcgc
gccattgagaccatcaaggacgaactgcgcgagcgcctggaatttttccgcaaggaaaac
aagctcattgaagagcagcgtctcgaacagcgcacccgcttcgacatcgagatgatgacc
gaaatcggcttcaccaaaggcatcgaaaactattcgcgccatctgtccggcgccaaggcc
ggtgaaccgccgccgacgctggttgactacctgccacaagacgcgatcatgttcctcgac
gagtcgcacgtactgatcggccagttgaacggcatgtacaacggtgaccgcgcgcgcaag
accaacctggtcgactacggtttccgcctgccgtcggcgttggataatcgcccgctgaag
ttcgatgaattccagagcaagttgcgccagaccgtgttcgtgtcggccacgccggcggat
tttgaaaacacccatgccgatcaggtggtcgagcaagtggtgcgtccgaccggcctggtt
gatccgctgattcaggtgcgccctgccaccacgcaggtcgacgatctgatgcaggaaatc
accatccgcgtcaaaaagaacgagcgcgtgctggtgacgacattgaccaagcgcatggcc
gaacagttgacggaattcctgagcgacaacggcatcaaggtacgttatctgcatagcgat
atcgacaccgtcgaacgcgtggaaatcatccgcgatctgcgtctcggcaccttcgacgtg
ctggtcggcatcaacttgctgcgcgaaggtctggatattcccgaagtgtcgctggtggcg
attcttgatgccgacaaggaaggcttcctgcggtccgaacgcagtctgatccagaccatc
ggccgcgccgcgcgtaacctcaacggcatggcgatcctgtatggcgacaaggtcaccgac
tcgatgcaccgcgccatcggcgaaaccgaacgccgccgggccaagcaggttgccttcaac
gaagccaacggcatcacgccgatgggcatcaagaaggaaatccgggaactcatcgacggc
gtctacagcccgcaggaagcgcgtgtcgaactgatggtcgcgcaagagcaggccaactac
gaagcaatgagcgagaagcaagtcagcaaggaaatcaagcgcctcgaaaaactcatgctg
gatcacgccaagaacctggagttcgaaaaggcagcgaaggtgcgcgatcagctgcatcag
ctcaagcagcaattgtttggtgctgcgggtgacgataacatcgcggtagcctga
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