Herbaspirillum sp. meg3: hmeg3_10400
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Entry
hmeg3_10400 CDS
T05024
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
hee
Herbaspirillum sp. meg3
Brite
KEGG Orthology (KO) [BR:
hee00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
hee03009
]
hmeg3_10400
Enzymes [BR:
hee01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
hmeg3_10400
Ribosome biogenesis [BR:
hee03009
]
Prokaryotic type
rRNA helicases
hmeg3_10400
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
ERCC3_RAD25_C
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ASU38666
UniProt:
A0A223P9D1
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All DBs
Position
complement(2292001..2293407)
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AA seq
468 aa
AA seq
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MVNTTPSPSFPFSNLALMPAMLANLDALGYREMTTIQAESLPSALEGRDLIAQAKTGSGK
TAAFGIAMLHRLNPAYFAIQGLVICPTRELADQVSNELRRLARFTENIKILTLCGGTAMR
PQIASLEHGCHIVVGTPGRIRDHIGRDTINLKAVQTLVLDEADRMVDMGFYEDIEGIVSA
CPSRRQTLLFSATYPDDIRKASSRFLHDPVEIKVEAQHDGEKIEQRFFEVSAEQRNFAVA
RLLQHYQPVSTLAFCNTKIHCRELAEELRAQGFSALALYGDLEQRERDEILVQFANQSCS
VLVATDVAARGLDIANLSAVINVDVTRDTEVHIHRIGRTGRGQDKGLALNLCIPTEKRWV
KLIEEYQKAPVQWFDLNALDTNEDKVLRAPMRTLCIQGGKKDKLRPGDLLGALTGDVGLT
KEQVGKINVFEFSTYVALDYRIAEKAYARLSEGNIKGRNFKMRLMRTA
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
atggtgaacacgacaccctcgccctcctttcctttttcaaatctggcgctcatgccggcc
atgctcgccaacctggacgcgctcggctatcgcgagatgacgacgatccaggctgaaagt
ctgccttcggcgctggaaggacgcgatttgattgctcaggcaaagaccggcagcggcaag
actgcagcgtttggcattgccatgttgcatcggctgaatccggcgtattttgcgattcag
ggcctggtcatttgcccgacgcgtgaactggcggatcaggtatcgaatgaattgcgccgc
cttgcgcgctttaccgaaaacatcaagatcctgaccttgtgcggcggcactgccatgcgc
ccgcaaattgcatcgctggaacatggctgtcatatcgtcgtcggtacacccggtcgcatc
cgtgaccacatcggccgcgacaccatcaacctcaaagccgtccagacgctggtgctggac
gaagccgaccgcatggtcgacatgggattctacgaggacatcgaagggatcgtcagcgcc
tgcccctcccgtcgccagactttgctgttttcagcgacctaccctgacgatatccgcaag
gccagttcacgcttcctgcacgacccggtagaaatcaaggtcgaagcccagcacgatggc
gaaaaaatcgaacagcgcttttttgaagtctcggccgagcagcgcaattttgcggttgca
cggctgctgcaacactatcagccggtatcgacgctggccttctgcaacaccaagatccat
tgtcgcgaactggcggaagaattgcgcgcacaaggattcagcgcattggccctgtacggc
gatctggagcaacgcgagcgcgatgaaatcctggtgcaattcgccaatcaaagctgttcg
gtgctggtcgcgacggatgtggcggcacgcggactcgacattgccaacctgagcgccgtg
atcaacgtcgacgtcacccgcgacacggaagtccacatccaccgcatcggccgcaccggc
cgcggacaggacaagggtctggcgctgaatctgtgcatcccgaccgaaaaacgctgggtg
aaactgattgaggaatatcagaaagcgccggtgcaatggttcgacctcaatgcgctggac
accaatgaagacaaggtattgcgagcaccgatgcgcaccttgtgcattcagggcggcaag
aaggacaagctgcgtccgggcgacttgctcggcgcactgaccggcgatgtcggcctgacc
aaggagcaggtcggcaagatcaacgtgttcgagttttcaacctatgtggcgctggactac
cgcattgctgaaaaagcctacgcacgtctgagcgaaggcaacatcaagggccgcaacttc
aaaatgcgtctgatgcgaacagcctga
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